Analysis of interatomic Contacts of Structural Units in PDB entry:
5D0A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5D0A entry

There are 6 chains in PDB entry 5D0A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	THR 381
B	ASN 2	THR 381
C	ASN 2	SER 378
D	ASN 2	ALA 377
E	C 28	G 42
F	G 27	C 43

There are100 helices in PDB entry 5D0A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	17	Right-handed alpha
Helix 2	AA2	A	30	43	Right-handed alpha
Helix 3	AA3	A	53	59	Right-handed alpha
Helix 4	AA4	A	59	64	Right-handed alpha
Helix 5	AA5	A	98	101	Right-handed 310
Helix 6	AA6	A	104	122	Right-handed alpha
Helix 7	AA7	A	139	147	Right-handed alpha
Helix 8	AA8	A	192	198	Right-handed alpha
Helix 9	AA9	A	211	213	Right-handed 310
Helix 10	AB1	A	214	220	Right-handed alpha
Helix 11	AB2	A	226	231	Right-handed alpha
Helix 12	AB3	A	241	246	Right-handed alpha
Helix 13	AB4	A	247	251	Right-handed 310
Helix 14	AB5	A	258	262	Right-handed 310
Helix 15	AB6	A	264	269	Right-handed alpha
Helix 16	AB7	A	271	276	Right-handed alpha
Helix 17	AB8	A	279	288	Right-handed alpha
Helix 18	AB9	A	290	294	Right-handed 310
Helix 19	AC1	A	296	311	Right-handed alpha
Helix 20	AC2	A	313	315	Right-handed 310
Helix 21	AC3	A	316	327	Right-handed alpha
Helix 22	AC4	A	329	344	Right-handed alpha
Helix 23	AC5	A	345	347	Right-handed 310
Helix 24	AC6	A	348	357	Right-handed alpha
Helix 25	AC7	A	361	380	Right-handed alpha
Helix 26	AC8	B	3	17	Right-handed alpha
Helix 27	AC9	B	30	44	Right-handed alpha
Helix 28	AD1	B	53	59	Right-handed alpha
Helix 29	AD2	B	59	64	Right-handed alpha
Helix 30	AD3	B	98	101	Right-handed 310
Helix 31	AD4	B	104	122	Right-handed alpha
Helix 32	AD5	B	139	147	Right-handed alpha
Helix 33	AD6	B	192	198	Right-handed alpha
Helix 34	AD7	B	211	213	Right-handed 310
Helix 35	AD8	B	214	220	Right-handed alpha
Helix 36	AD9	B	226	231	Right-handed alpha
Helix 37	AE1	B	241	246	Right-handed alpha
Helix 38	AE2	B	247	251	Right-handed 310
Helix 39	AE3	B	258	262	Right-handed 310
Helix 40	AE4	B	264	269	Right-handed alpha
Helix 41	AE5	B	271	276	Right-handed alpha
Helix 42	AE6	B	279	288	Right-handed alpha
Helix 43	AE7	B	290	294	Right-handed 310
Helix 44	AE8	B	297	311	Right-handed alpha
Helix 45	AE9	B	313	315	Right-handed 310
Helix 46	AF1	B	316	327	Right-handed alpha
Helix 47	AF2	B	329	344	Right-handed alpha
Helix 48	AF3	B	345	347	Right-handed 310
Helix 49	AF4	B	348	357	Right-handed alpha
Helix 50	AF5	B	361	380	Right-handed alpha
Helix 51	AF6	C	3	17	Right-handed alpha
Helix 52	AF7	C	30	43	Right-handed alpha
Helix 53	AF8	C	53	59	Right-handed alpha
Helix 54	AF9	C	59	64	Right-handed alpha
Helix 55	AG1	C	98	101	Right-handed 310
Helix 56	AG2	C	104	122	Right-handed alpha
Helix 57	AG3	C	139	147	Right-handed alpha
Helix 58	AG4	C	192	198	Right-handed alpha
Helix 59	AG5	C	211	213	Right-handed 310
Helix 60	AG6	C	214	220	Right-handed alpha
Helix 61	AG7	C	226	230	Right-handed 310
Helix 62	AG8	C	241	246	Right-handed alpha
Helix 63	AG9	C	247	251	Right-handed 310
Helix 64	AH1	C	258	262	Right-handed 310
Helix 65	AH2	C	264	269	Right-handed alpha
Helix 66	AH3	C	272	277	Right-handed 310
Helix 67	AH4	C	279	288	Right-handed alpha
Helix 68	AH5	C	290	294	Right-handed 310
Helix 69	AH6	C	297	312	Right-handed alpha
Helix 70	AH7	C	313	315	Right-handed 310
Helix 71	AH8	C	316	327	Right-handed alpha
Helix 72	AH9	C	329	344	Right-handed alpha
Helix 73	AI1	C	345	347	Right-handed 310
Helix 74	AI2	C	348	357	Right-handed alpha
Helix 75	AI3	C	361	378	Right-handed alpha
Helix 76	AI4	D	3	17	Right-handed alpha
Helix 77	AI5	D	30	43	Right-handed alpha
Helix 78	AI6	D	53	59	Right-handed alpha
Helix 79	AI7	D	59	64	Right-handed alpha
Helix 80	AI8	D	98	101	Right-handed 310
Helix 81	AI9	D	104	122	Right-handed alpha
Helix 82	AJ1	D	139	147	Right-handed alpha
Helix 83	AJ2	D	192	198	Right-handed alpha
Helix 84	AJ3	D	211	213	Right-handed 310
Helix 85	AJ4	D	214	220	Right-handed alpha
Helix 86	AJ5	D	226	230	Right-handed 310
Helix 87	AJ6	D	241	246	Right-handed alpha
Helix 88	AJ7	D	247	251	Right-handed 310
Helix 89	AJ8	D	258	262	Right-handed 310
Helix 90	AJ9	D	264	269	Right-handed alpha
Helix 91	AK1	D	271	277	Right-handed alpha
Helix 92	AK2	D	279	288	Right-handed alpha
Helix 93	AK3	D	290	294	Right-handed 310
Helix 94	AK4	D	296	311	Right-handed alpha
Helix 95	AK5	D	313	315	Right-handed 310
Helix 96	AK6	D	316	327	Right-handed alpha
Helix 97	AK7	D	329	344	Right-handed alpha
Helix 98	AK8	D	345	347	Right-handed 310
Helix 99	AK9	D	348	359	Right-handed alpha
Helix 100	AL1	D	361	377	Right-handed alpha

There are 16 sheets in PDB entry 5D0A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	26	first strand
Strand 2	A	69	76	anti-parallel
Strand 3	A	167	174	anti-parallel
Strand 4	A	129	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	A	236	238	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	158	159	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	208	209	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	26	first strand
Strand 2	B	69	76	anti-parallel
Strand 3	B	167	174	anti-parallel
Strand 4	B	129	132	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	236	238	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	158	159	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	208	209	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	26	first strand
Strand 2	C	69	76	anti-parallel
Strand 3	C	167	174	anti-parallel
Strand 4	C	129	132	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	96	first strand
Strand 2	C	236	238	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	152	first strand
Strand 2	C	158	159	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	205	first strand
Strand 2	C	208	209	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	26	first strand
Strand 2	D	69	76	anti-parallel
Strand 3	D	167	174	anti-parallel
Strand 4	D	129	132	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	236	238	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	152	first strand
Strand 2	D	158	159	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	205	first strand
Strand 2	D	208	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5D0A

Analysis of interatomic Contacts of Structural Units in PDB entry:
5D0A