Analysis of interatomic Contacts of Structural Units in PDB entry:
5D0G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D0G entry

There are 2 chains in PDB entry 5D0G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 102LEU 269
B
 MET 103LEU 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5D0G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
116 147Right-handed alpha
Helix 2
AA2
A
165 184Right-handed alpha
Helix 3
AA3
A
212 225Right-handed alpha
Helix 4
AA4
A
234 240Right-handed alpha
Helix 5
AA5
B
116 125Right-handed alpha
Helix 6
AA6
B
125 147Right-handed alpha
Helix 7
AA7
B
165 182Right-handed alpha
Helix 8
AA8
B
212 225Right-handed alpha
Helix 9
AA9
B
234 240Right-handed alpha
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There are 4 sheets in PDB entry 5D0G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
158 163anti-parallel
Strand 3
A
105 114anti-parallel
Strand 4
A
194 206anti-parallel
Strand 5
A
209 211anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
158 163anti-parallel
Strand 3
A
105 114anti-parallel
Strand 4
A
194 206anti-parallel
Strand 5
A
230 233parallel
Strand 6
A
263 267anti-parallel
Strand 7
A
252 254anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 154first strand
Strand 2
B
159 163anti-parallel
Strand 3
B
105 114anti-parallel
Strand 4
B
194 206anti-parallel
Strand 5
B
230 233parallel
Strand 6
B
263 269anti-parallel
Strand 7
B
247 248anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 211first strand
Strand 2
B
194 206anti-parallel
Strand 3
B
230 233parallel
Strand 4
B
263 269anti-parallel
Strand 5
B
252 254anti-parallel
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