Analysis of interatomic Contacts of Structural Units in PDB entry:
5D0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D0J entry

There are 6 chains in PDB entry 5D0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 426ALA 531
B
 SER 422ARG 529
C
 GLN 429VAL 530
D
 ALA 424THR 528
L
 GLU 3CYS 9
M
 SER 1SER 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5D0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
437 448Right-handed alpha
Helix 2
AA2
A
504 512Right-handed alpha
Helix 3
AA3
B
424 429Right-handed 310
Helix 4
AA4
B
437 448Right-handed alpha
Helix 5
AA5
B
504 512Right-handed alpha
Helix 6
AA6
C
437 448Right-handed alpha
Helix 7
AA7
C
504 512Right-handed alpha
Helix 8
AA8
D
424 429Right-handed 310
Helix 9
AA9
D
437 448Right-handed alpha
Helix 10
AB1
D
504 513Right-handed alpha
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There are 6 sheets in PDB entry 5D0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 502first strand
Strand 2
A
490 494anti-parallel
Strand 3
A
476 487anti-parallel
Strand 4
A
467 473anti-parallel
Strand 5
A
454 459anti-parallel
Strand 6
A
525 526parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 435first strand
Strand 2
B
454 459parallel
Strand 3
B
467 473anti-parallel
Strand 4
B
476 485anti-parallel
Strand 5
B
492 494anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 435first strand
Strand 2
B
454 459parallel
Strand 3
B
525 526parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
432 435first strand
Strand 2
C
454 459parallel
Strand 3
C
467 473anti-parallel
Strand 4
C
476 487anti-parallel
Strand 5
C
490 494anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
432 435first strand
Strand 2
C
454 459parallel
Strand 3
C
525 526parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
491 494first strand
Strand 2
D
477 486anti-parallel
Strand 3
D
467 472anti-parallel
Strand 4
D
454 459anti-parallel
Strand 5
D
525 526parallel
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