Analysis of interatomic Contacts of Structural Units in PDB entry:
5D0O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5D0O entry

There is 1 chain in PDB entry 5D0O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	ILE 668

There are 27 helices in PDB entry 5D0O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	67	Right-handed alpha
Helix 3	AA3	A	68	70	Right-handed 310
Helix 4	AA4	A	106	118	Right-handed alpha
Helix 5	AA5	A	129	143	Right-handed alpha
Helix 6	AA6	A	189	195	Right-handed alpha
Helix 7	AA7	A	215	233	Right-handed alpha
Helix 8	AA8	A	280	288	Right-handed alpha
Helix 9	AA9	A	297	315	Right-handed alpha
Helix 10	AB1	A	361	367	Right-handed alpha
Helix 11	AB2	A	378	391	Right-handed alpha
Helix 12	AB3	A	497	500	Right-handed 310
Helix 13	AB4	A	542	552	Right-handed alpha
Helix 14	AB5	A	647	651	Right-handed 310
Helix 15	AB6	A	691	695	Right-handed 310
Helix 16	AB7	C	32	37	Right-handed alpha
Helix 17	AB8	D	31	40	Right-handed alpha
Helix 18	AB9	D	47	62	Right-handed alpha
Helix 19	AC1	D	68	83	Right-handed alpha
Helix 20	AC2	D	84	99	Right-handed alpha
Helix 21	AC3	D	104	121	Right-handed alpha
Helix 22	AC4	D	137	154	Right-handed alpha
Helix 23	AC5	D	159	189	Right-handed alpha
Helix 24	AC6	D	191	205	Right-handed alpha
Helix 25	AC7	D	208	225	Right-handed alpha
Helix 26	AC8	D	227	240	Right-handed alpha
Helix 27	AC9	E	51	60	Right-handed alpha

There are 18 sheets in PDB entry 5D0O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	84	90	parallel
Strand 3	A	72	79	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	158	first strand
Strand 2	A	162	170	anti-parallel
Strand 3	A	93	100	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	336	342	parallel
Strand 3	A	321	327	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	404	first strand
Strand 2	A	411	418	anti-parallel
Strand 3	A	348	355	parallel

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There are 15 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	433	first strand
Strand 2	A	437	446	anti-parallel
Strand 3	A	454	462	anti-parallel
Strand 4	A	466	475	anti-parallel
Strand 5	A	488	495	anti-parallel
Strand 6	A	505	518	anti-parallel
Strand 7	A	523	537	anti-parallel
Strand 8	A	564	579	anti-parallel
Strand 9	A	590	600	anti-parallel
Strand 10	A	608	618	anti-parallel
Strand 11	A	632	640	anti-parallel
Strand 12	A	710	720	anti-parallel
Strand 13	A	734	745	anti-parallel
Strand 14	A	767	775	anti-parallel
Strand 15	A	787	789	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	620	first strand
Strand 2	A	628	630	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	777	first strand
Strand 2	A	782	784	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	183	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	247	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	386	388	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	75	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	94	96	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	125	first strand
Strand 2	B	130	135	anti-parallel
Strand 3	B	141	146	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	181	186	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	210	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	229	231	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	260	anti-parallel
Strand 3	B	268	271	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	295	297	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	345	350	anti-parallel
Strand 4	B	356	361	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	374	first strand
Strand 2	B	377	379	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	81	anti-parallel
Strand 3	E	85	95	anti-parallel
Strand 4	E	101	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5D0O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5D0O