Analysis of interatomic Contacts of Structural Units in PDB entry:
5D0Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5D0Q entry

There are 3 chains in PDB entry 5D0Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	ILE 806
C	CYS 25	LYS 344
D	GLU 26	ARG 223

There are 60 helices in PDB entry 5D0Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	69	Right-handed alpha
Helix 3	AA3	A	106	116	Right-handed alpha
Helix 4	AA4	A	126	128	Right-handed 310
Helix 5	AA5	A	129	141	Right-handed alpha
Helix 6	AA6	A	189	195	Right-handed alpha
Helix 7	AA7	A	218	233	Right-handed alpha
Helix 8	AA8	A	280	288	Right-handed alpha
Helix 9	AA9	A	297	315	Right-handed alpha
Helix 10	AB1	A	361	367	Right-handed alpha
Helix 11	AB2	A	378	393	Right-handed alpha
Helix 12	AB3	A	542	553	Right-handed alpha
Helix 13	AB4	C	39	44	Right-handed alpha
Helix 14	AB5	C	76	80	Right-handed 310
Helix 15	AB6	C	115	128	Right-handed alpha
Helix 16	AB7	C	190	224	Right-handed alpha
Helix 17	AB8	C	247	263	Right-handed alpha
Helix 18	AB9	C	284	289	Right-handed alpha
Helix 19	AC1	C	327	342	Right-handed alpha
Helix 20	AC2	D	31	46	Right-handed alpha
Helix 21	AC3	D	47	62	Right-handed alpha
Helix 22	AC4	D	67	83	Right-handed alpha
Helix 23	AC5	D	84	99	Right-handed alpha
Helix 24	AC6	D	104	121	Right-handed alpha
Helix 25	AC7	D	124	129	Right-handed alpha
Helix 26	AC8	D	137	154	Right-handed alpha
Helix 27	AC9	D	159	189	Right-handed alpha
Helix 28	AD1	D	190	205	Right-handed alpha
Helix 29	AD2	D	208	225	Right-handed alpha
Helix 30	AD3	D	227	241	Right-handed alpha
Helix 31	AD4	E	39	45	Right-handed alpha
Helix 32	AD5	E	51	59	Right-handed alpha
Helix 33	AD6	F	38	46	Right-handed alpha
Helix 34	AD7	F	55	69	Right-handed alpha
Helix 35	AD8	F	106	116	Right-handed alpha
Helix 36	AD9	F	126	128	Right-handed 310
Helix 37	AE1	F	129	145	Right-handed alpha
Helix 38	AE2	F	189	195	Right-handed alpha
Helix 39	AE3	F	218	233	Right-handed alpha
Helix 40	AE4	F	280	288	Right-handed alpha
Helix 41	AE5	F	297	316	Right-handed alpha
Helix 42	AE6	F	361	367	Right-handed alpha
Helix 43	AE7	F	378	393	Right-handed alpha
Helix 44	AE8	F	542	553	Right-handed alpha
Helix 45	AE9	G	38	44	Right-handed 310
Helix 46	AF1	G	190	195	Right-handed alpha
Helix 47	AF2	G	201	206	Right-handed alpha
Helix 48	AF3	I	39	45	Right-handed alpha
Helix 49	AF4	I	51	60	Right-handed alpha
Helix 50	AF5	H	31	46	Right-handed alpha
Helix 51	AF6	H	47	62	Right-handed alpha
Helix 52	AF7	H	67	83	Right-handed alpha
Helix 53	AF8	H	84	99	Right-handed alpha
Helix 54	AF9	H	104	121	Right-handed alpha
Helix 55	AG1	H	124	129	Right-handed alpha
Helix 56	AG2	H	137	154	Right-handed alpha
Helix 57	AG3	H	159	189	Right-handed alpha
Helix 58	AG4	H	190	205	Right-handed alpha
Helix 59	AG5	H	208	225	Right-handed alpha
Helix 60	AG6	H	227	241	Right-handed alpha

There are 21 sheets in PDB entry 5D0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	83	90	parallel
Strand 3	A	72	80	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	100	first strand
Strand 2	A	163	168	parallel
Strand 3	A	152	157	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	183	first strand
Strand 2	A	254	261	parallel
Strand 3	A	239	247	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	276	first strand
Strand 2	A	334	342	parallel
Strand 3	A	321	328	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	355	first strand
Strand 2	A	412	420	parallel
Strand 3	A	395	404	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	444	445	anti-parallel
Strand 3	A	457	462	anti-parallel
Strand 4	A	466	470	anti-parallel
Strand 5	A	484	494	anti-parallel
Strand 6	A	473	475	anti-parallel

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There are 16 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	444	445	anti-parallel
Strand 3	A	457	462	anti-parallel
Strand 4	A	466	470	anti-parallel
Strand 5	A	484	494	anti-parallel
Strand 6	A	505	520	anti-parallel
Strand 7	A	523	537	anti-parallel
Strand 8	A	565	579	anti-parallel
Strand 9	A	590	600	anti-parallel
Strand 10	A	608	620	anti-parallel
Strand 11	A	628	640	anti-parallel
Strand 12	A	710	720	anti-parallel
Strand 13	A	733	745	anti-parallel
Strand 14	A	767	778	anti-parallel
Strand 15	A	781	792	anti-parallel
Strand 16	A	802	805	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	674	first strand
Strand 2	A	700	705	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	100	first strand
Strand 2	C	103	108	anti-parallel
Strand 3	C	172	183	anti-parallel
Strand 4	C	157	167	anti-parallel
Strand 5	C	146	147	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	133	first strand
Strand 2	C	140	143	anti-parallel
Strand 3	C	157	167	anti-parallel
Strand 4	C	172	183	anti-parallel
Strand 5	C	186	187	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	233	first strand
Strand 2	C	241	245	anti-parallel
Strand 3	C	313	319	anti-parallel
Strand 4	C	301	309	anti-parallel
Strand 5	C	275	280	anti-parallel
Strand 6	C	264	270	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	65	first strand
Strand 2	E	71	77	anti-parallel
Strand 3	E	89	96	anti-parallel
Strand 4	E	100	108	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	32	first strand
Strand 2	F	83	90	parallel
Strand 3	F	72	80	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	100	first strand
Strand 2	F	163	170	parallel
Strand 3	F	150	157	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	180	183	first strand
Strand 2	F	254	261	parallel
Strand 3	F	239	247	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	267	276	first strand
Strand 2	F	334	342	parallel
Strand 3	F	321	328	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	348	355	first strand
Strand 2	F	411	420	parallel
Strand 3	F	395	404	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	425	426	first strand
Strand 2	F	444	445	anti-parallel
Strand 3	F	457	462	anti-parallel
Strand 4	F	467	470	anti-parallel
Strand 5	F	484	494	anti-parallel
Strand 6	F	473	475	anti-parallel

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There are 16 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	425	426	first strand
Strand 2	F	444	445	anti-parallel
Strand 3	F	457	462	anti-parallel
Strand 4	F	467	470	anti-parallel
Strand 5	F	484	494	anti-parallel
Strand 6	F	505	520	anti-parallel
Strand 7	F	523	537	anti-parallel
Strand 8	F	565	579	anti-parallel
Strand 9	F	590	600	anti-parallel
Strand 10	F	608	620	anti-parallel
Strand 11	F	628	640	anti-parallel
Strand 12	F	710	720	anti-parallel
Strand 13	F	733	745	anti-parallel
Strand 14	F	767	778	anti-parallel
Strand 15	F	781	792	anti-parallel
Strand 16	F	802	806	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	671	674	first strand
Strand 2	F	700	705	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	72	77	first strand
Strand 2	I	89	96	anti-parallel
Strand 3	I	100	108	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5D0Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5D0Q