Analysis of interatomic Contacts of Structural Units in PDB entry:
5D0U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D0U entry

There is 1 chain in PDB entry 5D0U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 61TRP 765
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5D0U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 72Right-handed alpha
Helix 2
AA2
A
83 94Right-handed alpha
Helix 3
AA3
A
95 100Right-handed 310
Helix 4
AA4
A
101 112Right-handed alpha
Helix 5
AA5
A
128 138Right-handed alpha
Helix 6
AA6
A
152 167Right-handed alpha
Helix 7
AA7
A
196 206Right-handed alpha
Helix 8
AA8
A
219 223Right-handed 310
Helix 9
AA9
A
224 238Right-handed alpha
Helix 10
AB1
A
255 262Right-handed alpha
Helix 11
AB2
A
288 304Right-handed alpha
Helix 12
AB3
A
315 337Right-handed alpha
Helix 13
AB4
A
352 358Right-handed alpha
Helix 14
AB5
A
359 361Right-handed 310
Helix 15
AB6
A
382 387Right-handed alpha
Helix 16
AB7
A
422 432Right-handed alpha
Helix 17
AB8
A
446 454Right-handed alpha
Helix 18
AB9
A
460 465Right-handed 310
Helix 19
AC1
A
467 478Right-handed alpha
Helix 20
AC2
A
481 485Right-handed 310
Helix 21
AC3
A
492 506Right-handed alpha
Helix 22
AC4
A
516 524Right-handed alpha
Helix 23
AC5
A
528 538Right-handed alpha
Helix 24
AC6
A
539 542Right-handed 310
Helix 25
AC7
A
543 555Right-handed alpha
Helix 26
AC8
A
563 565Right-handed 310
Helix 27
AC9
A
566 578Right-handed alpha
Helix 28
AD1
A
582 601Right-handed alpha
Helix 29
AD2
A
603 611Right-handed alpha
Helix 30
AD3
A
614 635Right-handed alpha
Helix 31
AD4
A
648 662Right-handed alpha
Helix 32
AD5
A
720 728Right-handed alpha
Helix 33
AD6
A
733 737Right-handed 310
Helix 34
AD7
A
740 757Right-handed alpha
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There are 4 sheets in PDB entry 5D0U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
175 179anti-parallel
Strand 3
A
191 195parallel
Strand 4
A
145 150parallel
Strand 5
A
212 217parallel
Strand 6
A
245 250parallel
Strand 7
A
114 118parallel
Strand 8
A
267 269parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 281first strand
Strand 2
A
439 443parallel
Strand 3
A
393 398parallel
Strand 4
A
308 312parallel
Strand 5
A
375 380parallel
Strand 6
A
342 347parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 408first strand
Strand 2
A
413 420anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
704 707first strand
Strand 2
A
711 714anti-parallel
Strand 3
A
684 687parallel
Strand 4
A
675 678anti-parallel
Strand 5
A
665 668anti-parallel
Strand 6
A
699 701anti-parallel
Strand 7
A
717 718anti-parallel
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