Analysis of interatomic Contacts of Structural Units in PDB entry:
5D10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D10 entry

There are 2 chains in PDB entry 5D10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 258LEU 533
B
 LYS 257LEU 533
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5D10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
263 265Right-handed 310
Helix 2
AA2
A
312 316Right-handed alpha
Helix 3
AA3
A
345 352Right-handed alpha
Helix 4
AA4
A
353 358Right-handed 310
Helix 5
AA5
A
359 380Right-handed alpha
Helix 6
AA6
A
388 390Right-handed 310
Helix 7
AA7
A
396 398Right-handed 310
Helix 8
AA8
A
425 429Right-handed 310
Helix 9
AA9
A
430 437Right-handed alpha
Helix 10
AB1
A
440 457Right-handed alpha
Helix 11
AB2
A
467 478Right-handed alpha
Helix 12
AB3
A
488 499Right-handed alpha
Helix 13
AB4
A
502 506Right-handed 310
Helix 14
AB5
A
508 518Right-handed alpha
Helix 15
AB6
A
518 523Right-handed alpha
Helix 16
AB7
B
263 265Right-handed 310
Helix 17
AB8
B
312 316Right-handed 310
Helix 18
AB9
B
345 351Right-handed alpha
Helix 19
AC1
B
353 358Right-handed 310
Helix 20
AC2
B
359 381Right-handed alpha
Helix 21
AC3
B
388 390Right-handed 310
Helix 22
AC4
B
396 398Right-handed 310
Helix 23
AC5
B
425 429Right-handed 310
Helix 24
AC6
B
430 437Right-handed alpha
Helix 25
AC7
B
440 457Right-handed alpha
Helix 26
AC8
B
467 477Right-handed alpha
Helix 27
AC9
B
488 499Right-handed alpha
Helix 28
AD1
B
502 506Right-handed 310
Helix 29
AD2
B
508 518Right-handed alpha
Helix 30
AD3
B
518 523Right-handed alpha
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There are 4 sheets in PDB entry 5D10. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 272first strand
Strand 2
A
281 286anti-parallel
Strand 3
A
290 297anti-parallel
Strand 4
A
334 338anti-parallel
Strand 5
A
325 329anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
400 402anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 274first strand
Strand 2
B
281 286anti-parallel
Strand 3
B
290 296anti-parallel
Strand 4
B
335 338anti-parallel
Strand 5
B
325 329anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 394first strand
Strand 2
B
400 402anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il