Analysis of interatomic Contacts of Structural Units in PDB entry:
5D11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D11 entry

There are 2 chains in PDB entry 5D11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 258LEU 533
B
 LYS 257LEU 533
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5D11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
263 265Right-handed 310
Helix 2
AA2
A
311 316Right-handed alpha
Helix 3
AA3
A
346 352Right-handed alpha
Helix 4
AA4
A
354 358Right-handed 310
Helix 5
AA5
A
359 380Right-handed alpha
Helix 6
AA6
A
388 390Right-handed 310
Helix 7
AA7
A
425 429Right-handed 310
Helix 8
AA8
A
430 437Right-handed alpha
Helix 9
AA9
A
440 457Right-handed alpha
Helix 10
AB1
A
467 477Right-handed alpha
Helix 11
AB2
A
488 499Right-handed alpha
Helix 12
AB3
A
502 506Right-handed 310
Helix 13
AB4
A
508 518Right-handed alpha
Helix 14
AB5
A
518 523Right-handed alpha
Helix 15
AB6
B
263 265Right-handed 310
Helix 16
AB7
B
308 315Right-handed alpha
Helix 17
AB8
B
346 352Right-handed alpha
Helix 18
AB9
B
353 357Right-handed 310
Helix 19
AC1
B
359 380Right-handed alpha
Helix 20
AC2
B
388 390Right-handed 310
Helix 21
AC3
B
396 398Right-handed 310
Helix 22
AC4
B
425 429Right-handed 310
Helix 23
AC5
B
430 437Right-handed alpha
Helix 24
AC6
B
440 457Right-handed alpha
Helix 25
AC7
B
467 477Right-handed alpha
Helix 26
AC8
B
488 499Right-handed alpha
Helix 27
AC9
B
502 506Right-handed 310
Helix 28
AD1
B
508 518Right-handed alpha
Helix 29
AD2
B
518 523Right-handed alpha
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There are 4 sheets in PDB entry 5D11. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 275first strand
Strand 2
A
280 286anti-parallel
Strand 3
A
290 296anti-parallel
Strand 4
A
335 338anti-parallel
Strand 5
A
325 329anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
392 394anti-parallel
Strand 3
A
400 402anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 276first strand
Strand 2
B
279 286anti-parallel
Strand 3
B
290 294anti-parallel
Strand 4
B
335 338anti-parallel
Strand 5
B
325 329anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 345first strand
Strand 2
B
392 394anti-parallel
Strand 3
B
400 402anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il