Analysis of interatomic Contacts of Structural Units in PDB entry:
5D12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D12 entry

There are 2 chains in PDB entry 5D12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 257LEU 533
B
 ASP 258LEU 533
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5D12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
303 307Right-handed 310
Helix 2
AA2
A
308 317Right-handed alpha
Helix 3
AA3
A
345 352Right-handed alpha
Helix 4
AA4
A
353 358Right-handed 310
Helix 5
AA5
A
359 380Right-handed alpha
Helix 6
AA6
A
430 437Right-handed alpha
Helix 7
AA7
A
441 456Right-handed alpha
Helix 8
AA8
A
469 477Right-handed alpha
Helix 9
AA9
A
488 499Right-handed alpha
Helix 10
AB1
A
508 518Right-handed alpha
Helix 11
AB2
A
518 523Right-handed alpha
Helix 12
AB3
B
263 265Right-handed 310
Helix 13
AB4
B
311 316Right-handed alpha
Helix 14
AB5
B
345 351Right-handed alpha
Helix 15
AB6
B
353 358Right-handed 310
Helix 16
AB7
B
359 380Right-handed alpha
Helix 17
AB8
B
432 437Right-handed alpha
Helix 18
AB9
B
440 457Right-handed alpha
Helix 19
AC1
B
467 476Right-handed alpha
Helix 20
AC2
B
488 499Right-handed alpha
Helix 21
AC3
B
508 518Right-handed alpha
Helix 22
AC4
B
518 523Right-handed alpha
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There are 6 sheets in PDB entry 5D12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
285 286anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 282first strand
Strand 2
A
292 296anti-parallel
Strand 3
A
335 339anti-parallel
Strand 4
A
325 329anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
409 410anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
400 402anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 274first strand
Strand 2
B
280 286anti-parallel
Strand 3
B
290 296anti-parallel
Strand 4
B
335 338anti-parallel
Strand 5
B
328 329anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 394first strand
Strand 2
B
400 402anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il