Analysis of interatomic Contacts of Structural Units in PDB entry:
5D17

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5D17 entry

There are 9 chains in PDB entry 5D17 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 376	GLU 534
B	GLN 376	ARG 533
C	GLN 376	ARG 533
D	ASP 377	ARG 533
E	GLN 376	ARG 533
F	GLN 376	ARG 533
G	GLN 376	ARG 533
H	ALA 378	ARG 533
I	GLN 376	SER 383

There are 60 helices in PDB entry 5D17. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	385	388	Right-handed 310
Helix 2	AA2	A	389	402	Right-handed alpha
Helix 3	AA3	A	472	487	Right-handed alpha
Helix 4	AA4	A	492	501	Right-handed alpha
Helix 5	AA5	A	520	534	Right-handed alpha
Helix 6	AA6	B	385	388	Right-handed 310
Helix 7	AA7	B	389	403	Right-handed alpha
Helix 8	AA8	B	469	487	Right-handed alpha
Helix 9	AA9	B	492	501	Right-handed alpha
Helix 10	AB1	B	520	533	Right-handed alpha
Helix 11	AB2	C	385	388	Right-handed 310
Helix 12	AB3	C	389	403	Right-handed alpha
Helix 13	AB4	C	469	487	Right-handed alpha
Helix 14	AB5	C	492	501	Right-handed alpha
Helix 15	AB6	C	520	533	Right-handed alpha
Helix 16	AB7	D	385	388	Right-handed 310
Helix 17	AB8	D	389	402	Right-handed alpha
Helix 18	AB9	D	469	487	Right-handed alpha
Helix 19	AC1	D	492	501	Right-handed alpha
Helix 20	AC2	D	520	533	Right-handed alpha
Helix 21	AC3	E	385	388	Right-handed 310
Helix 22	AC4	E	389	402	Right-handed alpha
Helix 23	AC5	E	469	487	Right-handed alpha
Helix 24	AC6	E	492	501	Right-handed alpha
Helix 25	AC7	E	520	533	Right-handed alpha
Helix 26	AC8	F	385	388	Right-handed 310
Helix 27	AC9	F	389	402	Right-handed alpha
Helix 28	AD1	F	469	487	Right-handed alpha
Helix 29	AD2	F	492	501	Right-handed alpha
Helix 30	AD3	F	520	533	Right-handed alpha
Helix 31	AD4	G	385	388	Right-handed 310
Helix 32	AD5	G	389	402	Right-handed alpha
Helix 33	AD6	G	469	487	Right-handed alpha
Helix 34	AD7	G	492	501	Right-handed alpha
Helix 35	AD8	G	520	533	Right-handed alpha
Helix 36	AD9	H	385	388	Right-handed 310
Helix 37	AE1	H	389	402	Right-handed alpha
Helix 38	AE2	H	472	487	Right-handed alpha
Helix 39	AE3	H	492	501	Right-handed alpha
Helix 40	AE4	H	520	533	Right-handed alpha
Helix 41	AE5	I	385	388	Right-handed 310
Helix 42	AE6	I	389	403	Right-handed alpha
Helix 43	AE7	I	469	487	Right-handed alpha
Helix 44	AE8	I	492	501	Right-handed alpha
Helix 45	AE9	I	520	533	Right-handed alpha
Helix 46	AF1	K	385	388	Right-handed 310
Helix 47	AF2	K	389	402	Right-handed alpha
Helix 48	AF3	K	469	487	Right-handed alpha
Helix 49	AF4	K	492	501	Right-handed alpha
Helix 50	AF5	K	520	533	Right-handed alpha
Helix 51	AF6	L	385	388	Right-handed 310
Helix 52	AF7	L	389	402	Right-handed alpha
Helix 53	AF8	L	469	487	Right-handed alpha
Helix 54	AF9	L	492	501	Right-handed alpha
Helix 55	AG1	L	520	533	Right-handed alpha
Helix 56	AG2	M	385	388	Right-handed 310
Helix 57	AG3	M	389	402	Right-handed alpha
Helix 58	AG4	M	469	487	Right-handed alpha
Helix 59	AG5	M	492	501	Right-handed alpha
Helix 60	AG6	M	520	533	Right-handed alpha

There are 12 sheets in PDB entry 5D17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	414	first strand
Strand 2	A	433	441	anti-parallel
Strand 3	A	444	451	anti-parallel
Strand 4	A	461	466	anti-parallel
Strand 5	A	505	509	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	414	first strand
Strand 2	B	433	441	anti-parallel
Strand 3	B	444	451	anti-parallel
Strand 4	B	461	466	anti-parallel
Strand 5	B	505	509	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	406	414	first strand
Strand 2	C	433	441	anti-parallel
Strand 3	C	444	451	anti-parallel
Strand 4	C	461	466	anti-parallel
Strand 5	C	505	509	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	414	first strand
Strand 2	D	433	441	anti-parallel
Strand 3	D	444	451	anti-parallel
Strand 4	D	461	466	anti-parallel
Strand 5	D	505	509	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	406	414	first strand
Strand 2	E	433	441	anti-parallel
Strand 3	E	444	451	anti-parallel
Strand 4	E	461	466	anti-parallel
Strand 5	E	505	509	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	406	414	first strand
Strand 2	F	433	441	anti-parallel
Strand 3	F	444	451	anti-parallel
Strand 4	F	461	466	anti-parallel
Strand 5	F	505	509	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	406	414	first strand
Strand 2	G	433	441	anti-parallel
Strand 3	G	444	451	anti-parallel
Strand 4	G	461	466	anti-parallel
Strand 5	G	505	509	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	406	414	first strand
Strand 2	H	433	441	anti-parallel
Strand 3	H	444	451	anti-parallel
Strand 4	H	461	466	anti-parallel
Strand 5	H	505	509	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	406	414	first strand
Strand 2	I	433	441	anti-parallel
Strand 3	I	444	451	anti-parallel
Strand 4	I	461	466	anti-parallel
Strand 5	I	505	509	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	406	414	first strand
Strand 2	K	433	441	anti-parallel
Strand 3	K	444	451	anti-parallel
Strand 4	K	461	466	anti-parallel
Strand 5	K	505	509	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	406	414	first strand
Strand 2	L	433	441	anti-parallel
Strand 3	L	444	451	anti-parallel
Strand 4	L	461	466	anti-parallel
Strand 5	L	505	509	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	406	414	first strand
Strand 2	M	433	441	anti-parallel
Strand 3	M	444	451	anti-parallel
Strand 4	M	461	466	anti-parallel
Strand 5	M	505	509	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5D17

Analysis of interatomic Contacts of Structural Units in PDB entry:
5D17