Analysis of interatomic Contacts of Structural Units in PDB entry:
5D1N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D1N entry

There is 1 chain in PDB entry 5D1N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9GLY 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5D1N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 30Right-handed alpha
Helix 2
AA2
A
42 52Right-handed alpha
Helix 3
AA3
A
63 66Right-handed 310
Helix 4
AA4
A
67 74Right-handed alpha
Helix 5
AA5
A
75 76Right-handed 310
Helix 6
AA6
A
77 81Right-handed 310
Helix 7
AA7
A
92 96Right-handed 310
Helix 8
AA8
A
97 101Right-handed 310
Helix 9
AA9
A
113 123Right-handed alpha
Helix 10
AB1
A
124 134Right-handed alpha
Helix 11
AB2
A
148 151Right-handed 310
Helix 12
AB3
A
165 172Right-handed alpha
Helix 13
AB4
A
173 181Right-handed alpha
Helix 14
AB5
A
197 199Right-handed 310
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There are 2 sheets in PDB entry 5D1N. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
15 16anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
55 61parallel
Strand 3
A
32 37parallel
Strand 4
A
106 110parallel
Strand 5
A
140 146parallel
Strand 6
A
212 222anti-parallel
Strand 7
A
183 195anti-parallel
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