Analysis of interatomic Contacts of Structural Units in PDB entry:
5D1O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D1O entry

There are 3 chains in PDB entry 5D1O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7TYR 381
B
 ASP 7GLU 96
B
 MET 98TYR 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5D1O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 18Right-handed alpha
Helix 2
AA2
A
20 27Right-handed alpha
Helix 3
AA3
A
83 88Right-handed alpha
Helix 4
AA4
A
123 134Right-handed alpha
Helix 5
AA5
A
136 143Right-handed alpha
Helix 6
AA6
A
164 168Right-handed 310
Helix 7
AA7
A
187 197Right-handed alpha
Helix 8
AA8
A
211 227Right-handed alpha
Helix 9
AA9
A
249 261Right-handed alpha
Helix 10
AB1
A
271 287Right-handed alpha
Helix 11
AB2
A
289 317Right-handed alpha
Helix 12
AB3
A
331 344Right-handed alpha
Helix 13
AB4
A
365 377Right-handed alpha
Helix 14
AB5
B
9 18Right-handed alpha
Helix 15
AB6
B
20 29Right-handed alpha
Helix 16
AB7
B
82 88Right-handed alpha
Helix 17
AB8
B
123 134Right-handed alpha
Helix 18
AB9
B
136 143Right-handed alpha
Helix 19
AC1
B
164 168Right-handed 310
Helix 20
AC2
B
187 198Right-handed alpha
Helix 21
AC3
B
211 228Right-handed alpha
Helix 22
AC4
B
249 263Right-handed alpha
Helix 23
AC5
B
264 267Right-handed 310
Helix 24
AC6
B
272 287Right-handed alpha
Helix 25
AC7
B
289 317Right-handed alpha
Helix 26
AC8
B
331 344Right-handed alpha
Helix 27
AC9
B
365 377Right-handed alpha
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There are 8 sheets in PDB entry 5D1O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
42 46anti-parallel
Strand 3
A
57 61anti-parallel
Strand 4
A
65 68anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
245 248parallel
Strand 3
A
232 236anti-parallel
Strand 4
A
91 97anti-parallel
Strand 5
A
205 210anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
A
101 107anti-parallel
Strand 3
A
146 153anti-parallel
Strand 4
A
171 179anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 328first strand
Strand 2
A
358 364anti-parallel
Strand 3
A
349 355anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
42 46anti-parallel
Strand 3
B
57 61anti-parallel
Strand 4
B
65 68anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
245 248parallel
Strand 3
B
232 236anti-parallel
Strand 4
B
91 97anti-parallel
Strand 5
B
205 210anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 116first strand
Strand 2
B
101 107anti-parallel
Strand 3
B
146 153anti-parallel
Strand 4
B
171 179anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 328first strand
Strand 2
B
358 364anti-parallel
Strand 3
B
349 355anti-parallel
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