Analysis of interatomic Contacts of Structural Units in PDB entry:
5D1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D1R entry

There are 2 chains in PDB entry 5D1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 13HIS 239
B
 ARG 14HIS 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5D1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 33Right-handed alpha
Helix 2
AA2
A
38 46Right-handed alpha
Helix 3
AA3
A
49 54Right-handed alpha
Helix 4
AA4
A
59 85Right-handed alpha
Helix 5
AA5
A
90 109Right-handed alpha
Helix 6
AA6
A
109 118Right-handed alpha
Helix 7
AA7
A
127 132Right-handed alpha
Helix 8
AA8
A
133 135Right-handed 310
Helix 9
AA9
A
136 152Right-handed alpha
Helix 10
AB1
A
165 178Right-handed alpha
Helix 11
AB2
A
182 205Right-handed alpha
Helix 12
AB3
A
215 232Right-handed alpha
Helix 13
AB4
B
15 33Right-handed alpha
Helix 14
AB5
B
34 37Right-handed 310
Helix 15
AB6
B
38 46Right-handed alpha
Helix 16
AB7
B
49 54Right-handed alpha
Helix 17
AB8
B
59 85Right-handed alpha
Helix 18
AB9
B
90 109Right-handed alpha
Helix 19
AC1
B
109 118Right-handed alpha
Helix 20
AC2
B
127 136Right-handed alpha
Helix 21
AC3
B
136 152Right-handed alpha
Helix 22
AC4
B
165 178Right-handed alpha
Helix 23
AC5
B
182 205Right-handed alpha
Helix 24
AC6
B
215 233Right-handed alpha
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There are no sheets in PDB entry 5D1R
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il