Analysis of interatomic Contacts of Structural Units in PDB entry:
5D1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D1T entry

There is 1 chain in PDB entry 5D1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 267SER 776
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5D1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
267 278Right-handed alpha
Helix 2
AA2
A
278 284Right-handed alpha
Helix 3
AA3
A
286 298Right-handed alpha
Helix 4
AA4
A
303 310Right-handed alpha
Helix 5
AA5
A
312 321Right-handed alpha
Helix 6
AA6
A
323 327Right-handed 310
Helix 7
AA7
A
331 343Right-handed alpha
Helix 8
AA8
A
369 381Right-handed alpha
Helix 9
AA9
A
387 396Right-handed alpha
Helix 10
AB1
A
405 423Right-handed alpha
Helix 11
AB2
A
442 447Right-handed alpha
Helix 12
AB3
A
447 452Right-handed alpha
Helix 13
AB4
A
464 474Right-handed alpha
Helix 14
AB5
A
551 575Right-handed alpha
Helix 15
AB6
A
591 610Right-handed alpha
Helix 16
AB7
A
611 625Right-handed alpha
Helix 17
AB8
A
635 638Right-handed 310
Helix 18
AB9
A
639 644Right-handed alpha
Helix 19
AC1
A
648 652Right-handed 310
Helix 20
AC2
A
661 664Right-handed 310
Helix 21
AC3
A
679 701Right-handed alpha
Helix 22
AC4
A
707 710Right-handed 310
Helix 23
AC5
A
711 722Right-handed alpha
Helix 24
AC6
A
727 731Right-handed 310
Helix 25
AC7
A
732 744Right-handed alpha
Helix 26
AC8
A
748 759Right-handed alpha
Helix 27
AC9
A
759 776Right-handed alpha
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There are 3 sheets in PDB entry 5D1T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 441first strand
Strand 2
A
499 504anti-parallel
Strand 3
A
541 550parallel
Strand 4
A
525 536anti-parallel
Strand 5
A
477 480anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 487first strand
Strand 2
A
518 521anti-parallel
Strand 3
A
511 514anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 586first strand
Strand 2
A
629 632parallel
Strand 3
A
665 669parallel
Strand 4
A
657 660anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il