Analysis of interatomic Contacts of Structural Units in PDB entry:
5D1Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5D1Y entry

There are 2 chains in PDB entry 5D1Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 14	ARG 742
B	MET 1	ARG 742

There are 72 helices in PDB entry 5D1Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	24	Right-handed alpha
Helix 2	AA2	A	35	45	Right-handed alpha
Helix 3	AA3	A	52	67	Right-handed alpha
Helix 4	AA4	A	68	71	Right-handed 310
Helix 5	AA5	A	72	89	Right-handed alpha
Helix 6	AA6	A	93	103	Right-handed alpha
Helix 7	AA7	A	117	127	Right-handed alpha
Helix 8	AA8	A	127	135	Right-handed alpha
Helix 9	AA9	A	136	143	Right-handed 310
Helix 10	AB1	A	144	155	Right-handed alpha
Helix 11	AB2	A	166	180	Right-handed alpha
Helix 12	AB3	A	182	195	Right-handed alpha
Helix 13	AB4	A	201	208	Right-handed alpha
Helix 14	AB5	A	227	244	Right-handed alpha
Helix 15	AB6	A	272	286	Right-handed alpha
Helix 16	AB7	A	307	312	Right-handed alpha
Helix 17	AB8	A	335	344	Right-handed alpha
Helix 18	AB9	A	358	362	Right-handed 310
Helix 19	AC1	A	363	377	Right-handed alpha
Helix 20	AC2	A	386	401	Right-handed alpha
Helix 21	AC3	A	408	414	Right-handed alpha
Helix 22	AC4	A	417	421	Right-handed 310
Helix 23	AC5	A	452	455	Right-handed 310
Helix 24	AC6	A	462	484	Right-handed alpha
Helix 25	AC7	A	488	499	Right-handed alpha
Helix 26	AC8	A	507	515	Right-handed alpha
Helix 27	AC9	A	521	551	Right-handed alpha
Helix 28	AD1	A	559	564	Right-handed 310
Helix 29	AD2	A	566	571	Right-handed alpha
Helix 30	AD3	A	580	592	Right-handed alpha
Helix 31	AD4	A	604	612	Right-handed alpha
Helix 32	AD5	A	638	648	Right-handed alpha
Helix 33	AD6	A	652	662	Right-handed alpha
Helix 34	AD7	A	673	680	Right-handed alpha
Helix 35	AD8	A	687	700	Right-handed alpha
Helix 36	AD9	A	716	730	Right-handed alpha
Helix 37	AE1	B	14	24	Right-handed alpha
Helix 38	AE2	B	35	46	Right-handed alpha
Helix 39	AE3	B	53	67	Right-handed alpha
Helix 40	AE4	B	68	71	Right-handed 310
Helix 41	AE5	B	72	89	Right-handed alpha
Helix 42	AE6	B	93	103	Right-handed alpha
Helix 43	AE7	B	117	127	Right-handed alpha
Helix 44	AE8	B	127	135	Right-handed alpha
Helix 45	AE9	B	136	143	Right-handed 310
Helix 46	AF1	B	144	155	Right-handed alpha
Helix 47	AF2	B	166	180	Right-handed alpha
Helix 48	AF3	B	182	195	Right-handed alpha
Helix 49	AF4	B	201	208	Right-handed alpha
Helix 50	AF5	B	227	244	Right-handed alpha
Helix 51	AF6	B	271	286	Right-handed alpha
Helix 52	AF7	B	307	312	Right-handed alpha
Helix 53	AF8	B	335	345	Right-handed alpha
Helix 54	AF9	B	358	362	Right-handed 310
Helix 55	AG1	B	363	377	Right-handed alpha
Helix 56	AG2	B	386	401	Right-handed alpha
Helix 57	AG3	B	408	414	Right-handed alpha
Helix 58	AG4	B	417	421	Right-handed 310
Helix 59	AG5	B	452	455	Right-handed 310
Helix 60	AG6	B	462	484	Right-handed alpha
Helix 61	AG7	B	488	499	Right-handed alpha
Helix 62	AG8	B	507	515	Right-handed alpha
Helix 63	AG9	B	521	551	Right-handed alpha
Helix 64	AH1	B	560	564	Right-handed 310
Helix 65	AH2	B	566	571	Right-handed alpha
Helix 66	AH3	B	580	592	Right-handed alpha
Helix 67	AH4	B	604	612	Right-handed alpha
Helix 68	AH5	B	638	648	Right-handed alpha
Helix 69	AH6	B	652	661	Right-handed alpha
Helix 70	AH7	B	673	680	Right-handed alpha
Helix 71	AH8	B	687	700	Right-handed alpha
Helix 72	AH9	B	716	731	Right-handed alpha

There are 15 sheets in PDB entry 5D1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	162	163	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	446	450	anti-parallel
Strand 3	A	502	506	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	444	first strand
Strand 2	A	218	222	anti-parallel
Strand 3	A	247	251	parallel
Strand 4	A	297	301	parallel
Strand 5	A	328	334	parallel
Strand 6	A	404	407	parallel
Strand 7	A	734	736	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	262	first strand
Strand 2	A	267	268	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	382	385	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	629	first strand
Strand 2	A	632	637	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	710	711	first strand
Strand 2	A	739	740	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	2	4	anti-parallel
Strand 3	B	51	52	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	159	first strand
Strand 2	B	162	163	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	446	450	anti-parallel
Strand 3	B	502	506	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	218	222	anti-parallel
Strand 3	B	247	251	parallel
Strand 4	B	297	301	parallel
Strand 5	B	329	334	parallel
Strand 6	B	404	407	parallel
Strand 7	B	734	736	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	262	first strand
Strand 2	B	267	268	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	350	first strand
Strand 2	B	382	385	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	624	627	first strand
Strand 2	B	634	637	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	710	711	first strand
Strand 2	B	739	740	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5D1Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
5D1Y