Analysis of interatomic Contacts of Structural Units in PDB entry:
5D1Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5D1Z entry

There are 7 chains in PDB entry 5D1Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	GLU 215
B	GLU 2	LYS 223
C	ASP 2	GLU 214
D	GLN 1	SER 230
I	ASN 119	PHE 267
E	ASP 3	GLU 215
F	GLN 1	GLN 66

There are 27 helices in PDB entry 5D1Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	85	Right-handed 310
Helix 2	AA2	A	123	128	Right-handed alpha
Helix 3	AA3	A	185	189	Right-handed alpha
Helix 4	AA4	B	29	33	Right-handed 310
Helix 5	AA5	C	80	84	Right-handed 310
Helix 6	AA6	C	183	189	Right-handed alpha
Helix 7	AA7	D	88	92	Right-handed 310
Helix 8	AA8	D	216	219	Right-handed 310
Helix 9	AA9	I	128	133	Right-handed alpha
Helix 10	AB1	I	134	139	Right-handed 310
Helix 11	AB2	I	163	169	Right-handed alpha
Helix 12	AB3	E	81	85	Right-handed 310
Helix 13	AB4	E	124	128	Right-handed 310
Helix 14	AB5	E	185	189	Right-handed alpha
Helix 15	AB6	F	65	67	Right-handed 310
Helix 16	AB7	F	88	92	Right-handed 310
Helix 17	AB8	F	171	173	Right-handed 310
Helix 18	AB9	F	200	204	Right-handed 310
Helix 19	AC1	G	29	33	Right-handed 310
Helix 20	AC2	G	88	92	Right-handed 310
Helix 21	AC3	G	165	167	Right-handed 310
Helix 22	AC4	H	81	85	Right-handed 310
Helix 23	AC5	H	123	128	Right-handed alpha
Helix 24	AC6	H	185	191	Right-handed alpha
Helix 25	AC7	J	128	133	Right-handed alpha
Helix 26	AC8	J	134	139	Right-handed 310
Helix 27	AC9	J	163	169	Right-handed alpha

There are 45 sheets in PDB entry 5D1Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	9	first strand
Strand 2	A	21	27	anti-parallel
Strand 3	A	72	77	anti-parallel
Strand 4	A	64	67	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	15	first strand
Strand 2	A	104	108	parallel
Strand 3	A	87	92	anti-parallel
Strand 4	A	35	40	anti-parallel
Strand 5	A	47	51	anti-parallel
Strand 6	A	55	56	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	131	141	anti-parallel
Strand 3	A	175	184	anti-parallel
Strand 4	A	161	165	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	152	first strand
Strand 2	A	193	199	anti-parallel
Strand 3	A	207	212	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	19	26	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	69	74	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	117	120	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	35	40	anti-parallel
Strand 5	B	46	52	anti-parallel
Strand 6	B	59	61	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	117	120	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	109	112	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	133	first strand
Strand 2	B	145	154	anti-parallel
Strand 3	B	185	193	anti-parallel
Strand 4	B	172	174	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	133	first strand
Strand 2	B	145	154	anti-parallel
Strand 3	B	185	193	anti-parallel
Strand 4	B	178	179	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	163	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	215	220	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	71	76	anti-parallel
Strand 4	C	63	64	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	15	first strand
Strand 2	C	103	108	parallel
Strand 3	C	85	91	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	50	anti-parallel
Strand 6	C	54	55	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	132	140	anti-parallel
Strand 3	C	174	181	anti-parallel
Strand 4	C	160	164	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	149	first strand
Strand 2	C	192	198	anti-parallel
Strand 3	C	206	211	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	69	70	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	73	74	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	123	126	parallel
Strand 3	D	93	100	anti-parallel
Strand 4	D	35	41	anti-parallel
Strand 5	D	47	54	anti-parallel
Strand 6	D	59	61	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	123	126	parallel
Strand 3	D	93	100	anti-parallel
Strand 4	D	115	118	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	150	160	anti-parallel
Strand 3	D	191	200	anti-parallel
Strand 4	D	178	180	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	150	160	anti-parallel
Strand 3	D	191	200	anti-parallel
Strand 4	D	184	185	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	167	first strand
Strand 2	D	213	215	anti-parallel
Strand 3	D	220	222	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	148	151	first strand
Strand 2	I	174	177	anti-parallel
Strand 3	I	184	190	anti-parallel
Strand 4	I	220	226	anti-parallel
Strand 5	I	210	215	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	153	156	first strand
Strand 2	I	253	256	anti-parallel
Strand 3	I	233	242	anti-parallel
Strand 4	I	195	202	anti-parallel
Strand 5	I	205	207	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	153	156	first strand
Strand 2	I	253	256	anti-parallel
Strand 3	I	233	242	anti-parallel
Strand 4	I	245	249	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	9	first strand
Strand 2	E	21	27	anti-parallel
Strand 3	E	72	77	anti-parallel
Strand 4	E	64	66	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	16	first strand
Strand 2	E	105	109	parallel
Strand 3	E	86	92	anti-parallel
Strand 4	E	35	40	anti-parallel
Strand 5	E	47	51	anti-parallel
Strand 6	E	55	56	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	119	first strand
Strand 2	E	131	141	anti-parallel
Strand 3	E	175	184	anti-parallel
Strand 4	E	162	165	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	152	first strand
Strand 2	E	194	199	anti-parallel
Strand 3	E	207	210	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	79	84	anti-parallel
Strand 4	F	69	70	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	122	126	parallel
Strand 3	F	93	100	anti-parallel
Strand 4	F	35	41	anti-parallel
Strand 5	F	47	54	anti-parallel
Strand 6	F	59	61	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	122	126	parallel
Strand 3	F	93	100	anti-parallel
Strand 4	F	115	118	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	139	first strand
Strand 2	F	152	160	anti-parallel
Strand 3	F	191	198	anti-parallel
Strand 4	F	179	180	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	165	169	first strand
Strand 2	F	211	215	anti-parallel
Strand 3	F	220	222	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	8	first strand
Strand 2	G	19	26	anti-parallel
Strand 3	G	79	84	anti-parallel
Strand 4	G	69	74	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	117	120	parallel
Strand 3	G	93	100	anti-parallel
Strand 4	G	35	40	anti-parallel
Strand 5	G	47	52	anti-parallel
Strand 6	G	59	61	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	117	120	parallel
Strand 3	G	93	100	anti-parallel
Strand 4	G	109	112	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	133	first strand
Strand 2	G	144	154	anti-parallel
Strand 3	G	185	194	anti-parallel
Strand 4	G	172	174	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	133	first strand
Strand 2	G	144	154	anti-parallel
Strand 3	G	185	194	anti-parallel
Strand 4	G	178	179	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	160	163	first strand
Strand 2	G	203	209	anti-parallel
Strand 3	G	214	220	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	7	first strand
Strand 2	H	21	27	anti-parallel
Strand 3	H	72	77	anti-parallel
Strand 4	H	64	68	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	15	first strand
Strand 2	H	104	108	parallel
Strand 3	H	87	92	anti-parallel
Strand 4	H	35	40	anti-parallel
Strand 5	H	47	51	anti-parallel
Strand 6	H	55	56	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	120	first strand
Strand 2	H	131	141	anti-parallel
Strand 3	H	175	184	anti-parallel
Strand 4	H	161	162	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	156	first strand
Strand 2	H	147	152	anti-parallel
Strand 3	H	193	199	anti-parallel
Strand 4	H	207	212	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	124	125	first strand
Strand 2	J	209	215	anti-parallel
Strand 3	J	220	226	anti-parallel
Strand 4	J	184	190	anti-parallel
Strand 5	J	174	177	anti-parallel
Strand 6	J	148	151	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	153	156	first strand
Strand 2	J	245	260	anti-parallel
Strand 3	J	231	242	anti-parallel
Strand 4	J	195	201	anti-parallel
Strand 5	J	206	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5D1Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
5D1Z