Analysis of interatomic Contacts of Structural Units in PDB entry:
5D2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D2D entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 5D2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 230
B
 MET 1THR 229
C
 ARG 751ILE 752
C
 VAL 754GLN 767
C
 VAL 769THR 774
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 5D2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
18 32Right-handed alpha
Helix 3
AA3
A
37 68Right-handed alpha
Helix 4
AA4
A
73 104Right-handed alpha
Helix 5
AA5
A
104 109Right-handed alpha
Helix 6
AA6
A
111 133Right-handed alpha
Helix 7
AA7
A
135 160Right-handed alpha
Helix 8
AA8
A
164 181Right-handed alpha
Helix 9
AA9
A
184 201Right-handed alpha
Helix 10
AB1
A
207 230Right-handed alpha
Helix 11
AB2
B
2 16Right-handed alpha
Helix 12
AB3
B
18 32Right-handed alpha
Helix 13
AB4
B
37 68Right-handed alpha
Helix 14
AB5
B
74 104Right-handed alpha
Helix 15
AB6
B
104 109Right-handed alpha
Helix 16
AB7
B
111 132Right-handed alpha
Helix 17
AB8
B
137 160Right-handed alpha
Helix 18
AB9
B
164 181Right-handed alpha
Helix 19
AC1
B
184 206Right-handed alpha
Helix 20
AC2
B
213 228Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5D2D
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il