Analysis of interatomic Contacts of Structural Units in PDB entry:
5D2E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D2E entry

There is 1 chain in PDB entry 5D2E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5SER 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5D2E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 17Right-handed alpha
Helix 2
AA2
A
21 31Right-handed alpha
Helix 3
AA3
A
66 68Right-handed 310
Helix 4
AA4
A
69 77Right-handed alpha
Helix 5
AA5
A
107 121Right-handed alpha
Helix 6
AA6
A
140 151Right-handed alpha
Helix 7
AA7
A
151 165Right-handed alpha
Helix 8
AA8
A
185 202Right-handed alpha
Helix 9
AA9
A
221 234Right-handed alpha
Helix 10
AB1
A
283 297Right-handed alpha
Helix 11
AB2
A
310 322Right-handed alpha
Helix 12
AB3
A
336 352Right-handed alpha
Helix 13
AB4
A
373 382Right-handed alpha
Helix 14
AB5
A
385 395Right-handed alpha
Helix 15
AB6
A
410 412Right-handed 310
Helix 16
AB7
A
418 438Right-handed alpha
Helix 17
AB8
A
467 471Right-handed alpha
Helix 18
AB9
A
477 489Right-handed alpha
Helix 19
AC1
A
501 510Right-handed alpha
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There are 2 sheets in PDB entry 5D2E. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
100 103anti-parallel
Strand 3
A
84 89parallel
Strand 4
A
60 64parallel
Strand 5
A
127 133parallel
Strand 6
A
171 180parallel
Strand 7
A
205 214parallel
Strand 8
A
242 245parallel
Strand 9
A
249 257anti-parallel
Strand 10
A
35 46anti-parallel
Strand 11
A
494 499anti-parallel
Strand 12
A
443 449parallel
Strand 13
A
402 408parallel
Strand 14
A
356 359parallel
Strand 15
A
275 279parallel
Strand 16
A
300 304parallel
Strand 17
A
326 329parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 453first strand
Strand 2
A
475 476parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il