Analysis of interatomic Contacts of Structural Units in PDB entry:
5D2F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D2F entry

There is 1 chain in PDB entry 5D2F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ILE 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5D2F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 23Right-handed alpha
Helix 2
AA2
A
29 33Right-handed 310
Helix 3
AA3
A
38 56Right-handed alpha
Helix 4
AA4
A
69 77Right-handed alpha
Helix 5
AA5
A
101 103Right-handed 310
Helix 6
AA6
A
126 132Right-handed alpha
Helix 7
AA7
A
154 161Right-handed alpha
Helix 8
AA8
A
176 180Right-handed 310
Helix 9
AA9
A
202 204Right-handed 310
Helix 10
AB1
A
207 221Right-handed alpha
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There are 3 sheets in PDB entry 5D2F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 87first strand
Strand 2
A
60 66anti-parallel
Strand 3
A
231 233parallel
Strand 4
A
107 116anti-parallel
Strand 5
A
134 144anti-parallel
Strand 6
A
165 170anti-parallel
Strand 7
A
91 93parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 87first strand
Strand 2
A
60 66anti-parallel
Strand 3
A
231 233parallel
Strand 4
A
107 116anti-parallel
Strand 5
A
241 242anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
257 264parallel
Strand 3
A
248 253anti-parallel
Strand 4
A
186 191anti-parallel
Strand 5
A
194 200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il