Analysis of interatomic Contacts of Structural Units in PDB entry:
5D2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D2M entry

There are 5 chains in PDB entry 5D2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 157
B
 ILE 18GLY 93
C
 PRO 430VAL 587
D
 MET 1PRO 157
E
 MET 14PHE 87
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5D2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 19Right-handed alpha
Helix 2
AA2
A
94 98Right-handed 310
Helix 3
AA3
A
108 121Right-handed alpha
Helix 4
AA4
A
130 140Right-handed alpha
Helix 5
AA5
A
140 155Right-handed alpha
Helix 6
AA6
B
40 52Right-handed alpha
Helix 7
AA7
C
431 440Right-handed alpha
Helix 8
AA8
C
442 449Right-handed alpha
Helix 9
AA9
C
452 461Right-handed alpha
Helix 10
AB1
C
465 478Right-handed alpha
Helix 11
AB2
C
483 503Right-handed alpha
Helix 12
AB3
C
508 520Right-handed alpha
Helix 13
AB4
C
535 547Right-handed alpha
Helix 14
AB5
C
552 554Right-handed 310
Helix 15
AB6
C
555 565Right-handed alpha
Helix 16
AB7
C
567 572Right-handed alpha
Helix 17
AB8
C
573 585Right-handed alpha
Helix 18
AB9
D
2 19Right-handed alpha
Helix 19
AC1
D
94 98Right-handed 310
Helix 20
AC2
D
108 121Right-handed alpha
Helix 21
AC3
D
130 140Right-handed alpha
Helix 22
AC4
D
140 155Right-handed alpha
Helix 23
AC5
E
40 52Right-handed alpha
Helix 24
AC6
E
54 56Right-handed 310
Helix 25
AC7
F
432 440Right-handed alpha
Helix 26
AC8
F
442 449Right-handed alpha
Helix 27
AC9
F
452 461Right-handed alpha
Helix 28
AD1
F
465 478Right-handed alpha
Helix 29
AD2
F
483 504Right-handed alpha
Helix 30
AD3
F
508 520Right-handed alpha
Helix 31
AD4
F
535 547Right-handed alpha
Helix 32
AD5
F
552 554Right-handed 310
Helix 33
AD6
F
555 565Right-handed alpha
Helix 34
AD7
F
567 572Right-handed alpha
Helix 35
AD8
F
573 585Right-handed alpha
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There are 4 sheets in PDB entry 5D2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
36 46anti-parallel
Strand 3
A
57 63anti-parallel
Strand 4
A
74 77anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
58 62anti-parallel
Strand 3
B
82 88anti-parallel
Strand 4
B
19 23parallel
Strand 5
B
28 33anti-parallel
Strand 6
G
32 38anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 30first strand
Strand 2
D
36 46anti-parallel
Strand 3
D
57 63anti-parallel
Strand 4
D
74 77anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
65 66first strand
Strand 2
E
58 62anti-parallel
Strand 3
E
82 88anti-parallel
Strand 4
E
17 23parallel
Strand 5
E
29 35anti-parallel
Strand 6
G
42 47parallel
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