Analysis of interatomic Contacts of Structural Units in PDB entry:
5D2V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D2V entry

There is 1 chain in PDB entry 5D2V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3HIS 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5D2V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 44Right-handed alpha
Helix 2
AA2
A
55 74Right-handed alpha
Helix 3
AA3
A
86 97Right-handed alpha
Helix 4
AA4
A
104 110Right-handed alpha
Helix 5
AA5
A
111 122Right-handed alpha
Helix 6
AA6
A
154 165Right-handed alpha
Helix 7
AA7
A
184 192Right-handed alpha
Helix 8
AA8
A
193 195Right-handed 310
Helix 9
AA9
A
207 217Right-handed alpha
Helix 10
AB1
A
225 230Right-handed alpha
Helix 11
AB2
A
234 245Right-handed alpha
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There are 2 sheets in PDB entry 5D2V. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
6 14anti-parallel
Strand 3
A
47 52parallel
Strand 4
A
78 81parallel
Strand 5
A
100 103parallel
Strand 6
A
126 135parallel
Strand 7
A
138 143anti-parallel
Strand 8
A
148 153anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
6 14anti-parallel
Strand 3
A
221 224parallel
Strand 4
A
199 202parallel
Strand 5
A
168 173parallel
Strand 6
A
126 135parallel
Strand 7
A
138 143anti-parallel
Strand 8
A
148 153anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il