Analysis of interatomic Contacts of Structural Units in PDB entry:
5D3F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D3F entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 5D3F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2THR 231
B
 ASP 2THR 231
C
 PRO 775ILE 777
C
 VAL 779GLN 792
C
 VAL 794THR 799
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5D3F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
18 31Right-handed alpha
Helix 3
AA3
A
37 68Right-handed alpha
Helix 4
AA4
A
79 106Right-handed alpha
Helix 5
AA5
A
106 111Right-handed alpha
Helix 6
AA6
A
113 133Right-handed alpha
Helix 7
AA7
A
136 138Right-handed 310
Helix 8
AA8
A
139 162Right-handed alpha
Helix 9
AA9
A
166 183Right-handed alpha
Helix 10
AB1
A
186 205Right-handed alpha
Helix 11
AB2
A
209 231Right-handed alpha
Helix 12
AB3
B
3 16Right-handed alpha
Helix 13
AB4
B
18 32Right-handed alpha
Helix 14
AB5
B
37 66Right-handed alpha
Helix 15
AB6
B
76 106Right-handed alpha
Helix 16
AB7
B
106 111Right-handed alpha
Helix 17
AB8
B
113 133Right-handed alpha
Helix 18
AB9
B
136 162Right-handed alpha
Helix 19
AC1
B
166 183Right-handed alpha
Helix 20
AC2
B
186 206Right-handed alpha
Helix 21
AC3
B
209 212Right-handed 310
Helix 22
AC4
B
213 230Right-handed alpha
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There are no sheets in PDB entry 5D3F
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il