Analysis of interatomic Contacts of Structural Units in PDB entry:
5D3I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D3I entry

There are 2 chains in PDB entry 5D3I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 27LEU 575
B
 LYS 137LYS 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5D3I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
212 221Right-handed alpha
Helix 2
AA2
A
262 271Right-handed alpha
Helix 3
AA3
A
272 276Right-handed 310
Helix 4
AA4
A
328 335Right-handed alpha
Helix 5
AA5
A
352 359Right-handed alpha
Helix 6
AA6
A
373 381Right-handed alpha
Helix 7
AA7
A
401 409Right-handed alpha
Helix 8
AA8
A
410 412Right-handed 310
Helix 9
AA9
A
494 498Right-handed 310
Helix 10
AB1
A
515 522Right-handed alpha
Helix 11
AB2
A
538 548Right-handed alpha
Helix 12
AB3
A
549 554Right-handed 310
Helix 13
AB4
B
138 145Right-handed alpha
Helix 14
AB5
B
184 190Right-handed alpha
Helix 15
AB6
B
260 276Right-handed alpha
Helix 16
AB7
B
305 310Right-handed 310
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There are 9 sheets in PDB entry 5D3I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
35 37anti-parallel
Strand 3
A
56 58parallel
Strand 4
A
80 82parallel
Strand 5
A
104 106parallel
Strand 6
A
128 130parallel
Strand 7
A
153 158parallel
Strand 8
A
175 183parallel
Strand 9
A
199 206parallel
Strand 10
A
226 230parallel
Strand 11
A
253 257parallel
Strand 12
A
281 285parallel
Strand 13
A
311 315parallel
Strand 14
A
340 344parallel
Strand 15
A
364 366parallel
Strand 16
A
391 393parallel
Strand 17
A
417 419parallel
Strand 18
A
440 442parallel
Strand 19
A
461 463parallel
Strand 20
A
481 483parallel
Strand 21
A
503 505parallel
Strand 22
A
527 529parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
90 91parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
188 189parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
288 289parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 536first strand
Strand 2
A
564 566parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 157first strand
Strand 2
B
195 202anti-parallel
Strand 3
B
219 221anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
178 181anti-parallel
Strand 3
B
214 216parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 253first strand
Strand 2
B
229 238anti-parallel
Strand 3
B
318 326parallel
Strand 4
B
283 290anti-parallel
Strand 5
B
295 299anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 259first strand
Strand 2
B
312 314anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il