Analysis of interatomic Contacts of Structural Units in PDB entry:
5D3K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D3K entry

There is 1 chain in PDB entry 5D3K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 15SER 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5D3K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
30 43Right-handed alpha
Helix 3
AA3
A
81 84Right-handed 310
Helix 4
AA4
A
85 93Right-handed alpha
Helix 5
AA5
A
115 132Right-handed alpha
Helix 6
AA6
A
142 158Right-handed alpha
Helix 7
AA7
A
176 182Right-handed alpha
Helix 8
AA8
A
182 193Right-handed alpha
Helix 9
AA9
A
199 216Right-handed alpha
Helix 10
AB1
A
260 264Right-handed 310
Helix 11
AB2
A
266 279Right-handed alpha
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There are 2 sheets in PDB entry 5D3K. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
112 113parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
98 101anti-parallel
Strand 3
A
69 73parallel
Strand 4
A
136 141parallel
Strand 5
A
164 168parallel
Strand 6
A
225 230parallel
Strand 7
A
251 255parallel
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