Analysis of interatomic Contacts of Structural Units in PDB entry:
5D3Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D3Q entry

There are 2 chains in PDB entry 5D3Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5GLY 743
B
 GLY 5ASP 744
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 5D3Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 22Right-handed alpha
Helix 2
AA2
A
26 30Right-handed 310
Helix 3
AA3
A
43 53Right-handed alpha
Helix 4
AA4
A
93 110Right-handed alpha
Helix 5
AA5
A
151 165Right-handed alpha
Helix 6
AA6
A
180 183Right-handed 310
Helix 7
AA7
A
184 194Right-handed alpha
Helix 8
AA8
A
206 210Right-handed 310
Helix 9
AA9
A
216 221Right-handed alpha
Helix 10
AB1
A
238 244Right-handed alpha
Helix 11
AB2
A
247 262Right-handed alpha
Helix 12
AB3
A
265 272Right-handed 310
Helix 13
AB4
A
273 312Right-handed alpha
Helix 14
AB5
A
725 743Right-handed alpha
Helix 15
AB6
B
5 7Right-handed 310
Helix 16
AB7
B
8 23Right-handed alpha
Helix 17
AB8
B
26 30Right-handed 310
Helix 18
AB9
B
43 53Right-handed alpha
Helix 19
AC1
B
93 107Right-handed alpha
Helix 20
AC2
B
151 165Right-handed alpha
Helix 21
AC3
B
180 183Right-handed 310
Helix 22
AC4
B
184 194Right-handed alpha
Helix 23
AC5
B
206 210Right-handed 310
Helix 24
AC6
B
216 221Right-handed alpha
Helix 25
AC7
B
238 244Right-handed alpha
Helix 26
AC8
B
247 262Right-handed alpha
Helix 27
AC9
B
265 272Right-handed 310
Helix 28
AD1
B
273 313Right-handed alpha
Helix 29
AD2
B
326 744Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5D3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
120 126anti-parallel
Strand 3
A
69 75parallel
Strand 4
A
132 136anti-parallel
Strand 5
A
33 38parallel
Strand 6
A
169 176parallel
Strand 7
A
200 205parallel
Strand 8
A
231 233parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 83first strand
Strand 2
B
120 126anti-parallel
Strand 3
B
69 75parallel
Strand 4
B
132 136anti-parallel
Strand 5
B
33 38parallel
Strand 6
B
169 176parallel
Strand 7
B
200 205parallel
Strand 8
B
231 233parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il