Analysis of interatomic Contacts of Structural Units in PDB entry:
5D40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D40 entry

There are 2 chains in PDB entry 5D40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4ARG 406
B
 PRO 4ARG 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5D40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed 310
Helix 2
AA2
A
16 27Right-handed alpha
Helix 3
AA3
A
33 35Right-handed 310
Helix 4
AA4
A
42 51Right-handed alpha
Helix 5
AA5
A
59 68Right-handed alpha
Helix 6
AA6
A
77 84Right-handed alpha
Helix 7
AA7
A
85 90Right-handed 310
Helix 8
AA8
A
93 101Right-handed alpha
Helix 9
AA9
A
102 106Right-handed 310
Helix 10
AB1
A
107 128Right-handed alpha
Helix 11
AB2
A
138 142Right-handed alpha
Helix 12
AB3
A
144 154Right-handed alpha
Helix 13
AB4
A
158 160Right-handed 310
Helix 14
AB5
A
161 174Right-handed alpha
Helix 15
AB6
A
185 206Right-handed alpha
Helix 16
AB7
A
215 224Right-handed alpha
Helix 17
AB8
A
225 227Right-handed 310
Helix 18
AB9
A
231 248Right-handed alpha
Helix 19
AC1
A
249 265Right-handed alpha
Helix 20
AC2
A
265 275Right-handed alpha
Helix 21
AC3
A
275 290Right-handed alpha
Helix 22
AC4
A
320 325Right-handed alpha
Helix 23
AC5
A
343 347Right-handed 310
Helix 24
AC6
A
352 356Right-handed 310
Helix 25
AC7
A
359 378Right-handed alpha
Helix 26
AC8
B
5 13Right-handed 310
Helix 27
AC9
B
16 27Right-handed alpha
Helix 28
AD1
B
33 35Right-handed 310
Helix 29
AD2
B
42 51Right-handed alpha
Helix 30
AD3
B
59 68Right-handed alpha
Helix 31
AD4
B
77 84Right-handed alpha
Helix 32
AD5
B
85 90Right-handed 310
Helix 33
AD6
B
93 101Right-handed alpha
Helix 34
AD7
B
102 106Right-handed 310
Helix 35
AD8
B
107 128Right-handed alpha
Helix 36
AD9
B
138 142Right-handed alpha
Helix 37
AE1
B
144 154Right-handed alpha
Helix 38
AE2
B
158 160Right-handed 310
Helix 39
AE3
B
161 174Right-handed alpha
Helix 40
AE4
B
185 205Right-handed alpha
Helix 41
AE5
B
215 224Right-handed alpha
Helix 42
AE6
B
225 227Right-handed 310
Helix 43
AE7
B
231 248Right-handed alpha
Helix 44
AE8
B
249 265Right-handed alpha
Helix 45
AE9
B
265 275Right-handed alpha
Helix 46
AF1
B
275 281Right-handed alpha
Helix 47
AF2
B
281 290Right-handed alpha
Helix 48
AF3
B
320 325Right-handed alpha
Helix 49
AF4
B
343 347Right-handed 310
Helix 50
AF5
B
352 356Right-handed 310
Helix 51
AF6
B
359 378Right-handed alpha
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There are 8 sheets in PDB entry 5D40. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
37 40anti-parallel
Strand 3
A
316 319parallel
Strand 4
A
296 300anti-parallel
Strand 5
A
55 56anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
402 404anti-parallel
Strand 3
A
382 383anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 306first strand
Strand 2
A
309 311anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 389first strand
Strand 2
A
398 400anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
37 40anti-parallel
Strand 3
B
316 319parallel
Strand 4
B
296 300anti-parallel
Strand 5
B
55 56anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 137first strand
Strand 2
B
402 404anti-parallel
Strand 3
B
382 383anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 306first strand
Strand 2
B
309 311anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 389first strand
Strand 2
B
398 400anti-parallel
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