Analysis of interatomic Contacts of Structural Units in PDB entry:
5D4P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D4P entry

There are 3 chains in PDB entry 5D4P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ARG 107
B
 ILE 4ARG 107
C
 ASN 2ARG 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5D4P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 32Right-handed alpha
Helix 2
AA2
A
71 73Right-handed 310
Helix 3
AA3
A
74 89Right-handed alpha
Helix 4
AA4
A
102 106Right-handed 310
Helix 5
AA5
B
20 31Right-handed alpha
Helix 6
AA6
B
52 56Right-handed 310
Helix 7
AA7
B
71 89Right-handed alpha
Helix 8
AA8
B
102 107Right-handed 310
Helix 9
AA9
C
20 32Right-handed alpha
Helix 10
AB1
C
71 89Right-handed alpha
Helix 11
AB2
C
102 107Right-handed 310
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There are 5 sheets in PDB entry 5D4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
42 45anti-parallel
Strand 3
C
36 45anti-parallel
Strand 4
C
63 70anti-parallel
Strand 5
C
7 17anti-parallel
Strand 6
C
92 100anti-parallel
Strand 7
A
92 100anti-parallel
Strand 8
B
92 100anti-parallel
Strand 9
B
7 17anti-parallel
Strand 10
B
63 70anti-parallel
Strand 11
B
36 45anti-parallel
Strand 12
B
50 51anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
42 45anti-parallel
Strand 3
C
36 45anti-parallel
Strand 4
C
63 70anti-parallel
Strand 5
A
7 17first strand
Strand 6
A
36 39first strand
Strand 7
C
92 100first strand
Strand 8
B
92 100anti-parallel
Strand 9
B
7 17anti-parallel
Strand 10
B
63 70anti-parallel
Strand 11
B
36 45anti-parallel
Strand 12
B
50 51anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
42 45anti-parallel
Strand 3
C
36 45anti-parallel
Strand 4
C
63 70anti-parallel
Strand 5
A
92 100first strand
Strand 6
A
7 17anti-parallel
Strand 7
A
63 70anti-parallel
Strand 8
A
36 39anti-parallel
Strand 9
B
36 45anti-parallel
Strand 10
B
50 51anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
42 45anti-parallel
Strand 3
C
36 45anti-parallel
Strand 4
C
50 51anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
42 45anti-parallel
Strand 3
C
36 45anti-parallel
Strand 4
B
36 45anti-parallel
Strand 5
B
50 51anti-parallel
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