Analysis of interatomic Contacts of Structural Units in PDB entry:
5D4T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5D4T entry

There are 6 chains in PDB entry 5D4T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 13	LEU 268
B	MSE 13	LEU 268
C	MSE 13	LEU 268
D	MSE 13	LEU 268
E	MSE 13	LEU 268
F	MSE 13	LYS 32

There are 93 helices in PDB entry 5D4T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	43	Right-handed alpha
Helix 2	AA2	A	55	67	Right-handed alpha
Helix 3	AA3	A	97	106	Right-handed alpha
Helix 4	AA4	A	124	129	Right-handed alpha
Helix 5	AA5	A	146	153	Right-handed alpha
Helix 6	AA6	A	154	160	Right-handed alpha
Helix 7	AA7	A	161	163	Right-handed 310
Helix 8	AA8	A	184	202	Right-handed alpha
Helix 9	AA9	A	215	222	Right-handed alpha
Helix 10	AB1	A	225	234	Right-handed alpha
Helix 11	AB2	A	246	260	Right-handed alpha
Helix 12	AB3	B	22	43	Right-handed alpha
Helix 13	AB4	B	55	67	Right-handed alpha
Helix 14	AB5	B	97	106	Right-handed alpha
Helix 15	AB6	B	124	129	Right-handed alpha
Helix 16	AB7	B	146	153	Right-handed alpha
Helix 17	AB8	B	154	160	Right-handed alpha
Helix 18	AB9	B	161	163	Right-handed 310
Helix 19	AC1	B	184	202	Right-handed alpha
Helix 20	AC2	B	215	222	Right-handed alpha
Helix 21	AC3	B	225	234	Right-handed alpha
Helix 22	AC4	B	246	260	Right-handed alpha
Helix 23	AC5	C	22	42	Right-handed alpha
Helix 24	AC6	C	55	67	Right-handed alpha
Helix 25	AC7	C	68	70	Right-handed 310
Helix 26	AC8	C	97	106	Right-handed alpha
Helix 27	AC9	C	124	129	Right-handed alpha
Helix 28	AD1	C	146	153	Right-handed alpha
Helix 29	AD2	C	154	160	Right-handed alpha
Helix 30	AD3	C	161	163	Right-handed 310
Helix 31	AD4	C	184	202	Right-handed alpha
Helix 32	AD5	C	215	222	Right-handed alpha
Helix 33	AD6	C	225	234	Right-handed alpha
Helix 34	AD7	C	246	260	Right-handed alpha
Helix 35	AD8	D	22	43	Right-handed alpha
Helix 36	AD9	D	55	67	Right-handed alpha
Helix 37	AE1	D	68	70	Right-handed 310
Helix 38	AE2	D	97	106	Right-handed alpha
Helix 39	AE3	D	124	129	Right-handed alpha
Helix 40	AE4	D	146	153	Right-handed alpha
Helix 41	AE5	D	154	160	Right-handed alpha
Helix 42	AE6	D	161	163	Right-handed 310
Helix 43	AE7	D	184	202	Right-handed alpha
Helix 44	AE8	D	215	222	Right-handed alpha
Helix 45	AE9	D	225	234	Right-handed alpha
Helix 46	AF1	D	246	260	Right-handed alpha
Helix 47	AF2	E	22	42	Right-handed alpha
Helix 48	AF3	E	55	67	Right-handed alpha
Helix 49	AF4	E	97	106	Right-handed alpha
Helix 50	AF5	E	124	129	Right-handed alpha
Helix 51	AF6	E	146	153	Right-handed alpha
Helix 52	AF7	E	154	160	Right-handed alpha
Helix 53	AF8	E	161	163	Right-handed 310
Helix 54	AF9	E	184	202	Right-handed alpha
Helix 55	AG1	E	215	222	Right-handed alpha
Helix 56	AG2	E	225	234	Right-handed alpha
Helix 57	AG3	E	246	260	Right-handed alpha
Helix 58	AG4	F	22	43	Right-handed alpha
Helix 59	AG5	F	55	67	Right-handed alpha
Helix 60	AG6	F	68	70	Right-handed 310
Helix 61	AG7	F	97	106	Right-handed alpha
Helix 62	AG8	F	124	129	Right-handed alpha
Helix 63	AG9	F	146	153	Right-handed alpha
Helix 64	AH1	F	154	160	Right-handed alpha
Helix 65	AH2	F	161	163	Right-handed 310
Helix 66	AH3	F	184	202	Right-handed alpha
Helix 67	AH4	F	215	222	Right-handed alpha
Helix 68	AH5	F	225	234	Right-handed alpha
Helix 69	AH6	F	246	260	Right-handed alpha
Helix 70	AH7	G	22	43	Right-handed alpha
Helix 71	AH8	G	55	67	Right-handed alpha
Helix 72	AH9	G	68	70	Right-handed 310
Helix 73	AI1	G	97	106	Right-handed alpha
Helix 74	AI2	G	124	129	Right-handed alpha
Helix 75	AI3	G	146	153	Right-handed alpha
Helix 76	AI4	G	154	160	Right-handed alpha
Helix 77	AI5	G	161	163	Right-handed 310
Helix 78	AI6	G	184	202	Right-handed alpha
Helix 79	AI7	G	215	222	Right-handed alpha
Helix 80	AI8	G	225	234	Right-handed alpha
Helix 81	AI9	G	246	260	Right-handed alpha
Helix 82	AJ1	H	22	42	Right-handed alpha
Helix 83	AJ2	H	55	67	Right-handed alpha
Helix 84	AJ3	H	68	70	Right-handed 310
Helix 85	AJ4	H	97	106	Right-handed alpha
Helix 86	AJ5	H	124	129	Right-handed alpha
Helix 87	AJ6	H	146	153	Right-handed alpha
Helix 88	AJ7	H	154	160	Right-handed alpha
Helix 89	AJ8	H	161	163	Right-handed 310
Helix 90	AJ9	H	184	202	Right-handed alpha
Helix 91	AK1	H	215	222	Right-handed alpha
Helix 92	AK2	H	225	234	Right-handed alpha
Helix 93	AK3	H	246	260	Right-handed alpha

There are 16 sheets in PDB entry 5D4T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	238	242	anti-parallel
Strand 3	A	206	211	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	96	first strand
Strand 2	A	73	77	parallel
Strand 3	A	50	53	parallel
Strand 4	A	113	116	parallel
Strand 5	A	135	139	parallel
Strand 6	A	167	175	parallel
Strand 7	A	261	267	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	238	242	anti-parallel
Strand 3	B	206	211	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	73	77	parallel
Strand 3	B	50	53	parallel
Strand 4	B	113	116	parallel
Strand 5	B	135	139	parallel
Strand 6	B	167	175	parallel
Strand 7	B	261	267	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	18	first strand
Strand 2	C	238	242	anti-parallel
Strand 3	C	206	211	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	96	first strand
Strand 2	C	73	77	parallel
Strand 3	C	50	53	parallel
Strand 4	C	113	116	parallel
Strand 5	C	135	139	parallel
Strand 6	C	167	175	parallel
Strand 7	C	261	268	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	18	first strand
Strand 2	D	238	242	anti-parallel
Strand 3	D	206	211	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	96	first strand
Strand 2	D	72	77	parallel
Strand 3	D	49	53	parallel
Strand 4	D	113	116	parallel
Strand 5	D	135	139	parallel
Strand 6	D	167	175	parallel
Strand 7	D	261	267	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	18	first strand
Strand 2	E	238	242	anti-parallel
Strand 3	E	206	211	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	96	first strand
Strand 2	E	72	77	parallel
Strand 3	E	49	53	parallel
Strand 4	E	113	116	parallel
Strand 5	E	135	139	parallel
Strand 6	E	167	175	parallel
Strand 7	E	261	268	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	18	first strand
Strand 2	F	238	242	anti-parallel
Strand 3	F	206	211	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	96	first strand
Strand 2	F	73	77	parallel
Strand 3	F	50	53	parallel
Strand 4	F	113	116	parallel
Strand 5	F	135	139	parallel
Strand 6	F	167	175	parallel
Strand 7	F	261	268	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	18	first strand
Strand 2	G	238	242	anti-parallel
Strand 3	G	206	211	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	96	first strand
Strand 2	G	72	77	parallel
Strand 3	G	49	53	parallel
Strand 4	G	113	116	parallel
Strand 5	G	135	139	parallel
Strand 6	G	167	175	parallel
Strand 7	G	261	267	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	15	18	first strand
Strand 2	H	238	242	anti-parallel
Strand 3	H	206	211	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	92	96	first strand
Strand 2	H	73	77	parallel
Strand 3	H	50	53	parallel
Strand 4	H	113	116	parallel
Strand 5	H	135	139	parallel
Strand 6	H	167	175	parallel
Strand 7	H	261	268	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5D4T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5D4T