Analysis of interatomic Contacts of Structural Units in PDB entry:
5D4W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D4W entry

There are 3 chains in PDB entry 5D4W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 173PRO 891
B
 GLN 173PRO 891
C
 GLN 173PRO 891
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are113 helices in PDB entry 5D4W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
175 182Right-handed alpha
Helix 2
AA2
A
186 192Right-handed alpha
Helix 3
AA3
A
200 211Right-handed alpha
Helix 4
AA4
A
230 242Right-handed alpha
Helix 5
AA5
A
259 264Right-handed alpha
Helix 6
AA6
A
272 286Right-handed alpha
Helix 7
AA7
A
298 303Right-handed alpha
Helix 8
AA8
A
316 321Right-handed alpha
Helix 9
AA9
A
336 341Right-handed alpha
Helix 10
AB1
A
344 351Right-handed alpha
Helix 11
AB2
A
360 371Right-handed alpha
Helix 12
AB3
A
371 378Right-handed alpha
Helix 13
AB4
A
385 393Right-handed alpha
Helix 14
AB5
A
398 402Right-handed 310
Helix 15
AB6
A
403 424Right-handed alpha
Helix 16
AB7
A
427 442Right-handed alpha
Helix 17
AB8
A
442 447Right-handed alpha
Helix 18
AB9
A
455 496Right-handed alpha
Helix 19
AC1
A
497 508Right-handed alpha
Helix 20
AC2
A
515 521Right-handed alpha
Helix 21
AC3
A
530 542Right-handed alpha
Helix 22
AC4
A
542 547Right-handed alpha
Helix 23
AC5
A
562 574Right-handed alpha
Helix 24
AC6
A
580 586Right-handed alpha
Helix 25
AC7
A
592 600Right-handed alpha
Helix 26
AC8
A
603 618Right-handed alpha
Helix 27
AC9
A
641 652Right-handed alpha
Helix 28
AD1
A
654 656Right-handed 310
Helix 29
AD2
A
662 667Right-handed 310
Helix 30
AD3
A
668 675Right-handed alpha
Helix 31
AD4
A
693 698Right-handed alpha
Helix 32
AD5
A
714 724Right-handed alpha
Helix 33
AD6
A
767 777Right-handed alpha
Helix 34
AD7
A
784 789Right-handed alpha
Helix 35
AD8
A
799 820Right-handed alpha
Helix 36
AD9
A
830 842Right-handed alpha
Helix 37
AE1
A
849 859Right-handed alpha
Helix 38
AE2
A
863 869Right-handed alpha
Helix 39
AE3
B
175 180Right-handed alpha
Helix 40
AE4
B
185 192Right-handed alpha
Helix 41
AE5
B
200 211Right-handed alpha
Helix 42
AE6
B
230 242Right-handed alpha
Helix 43
AE7
B
259 264Right-handed alpha
Helix 44
AE8
B
272 286Right-handed alpha
Helix 45
AE9
B
298 303Right-handed alpha
Helix 46
AF1
B
316 321Right-handed alpha
Helix 47
AF2
B
333 341Right-handed alpha
Helix 48
AF3
B
344 350Right-handed alpha
Helix 49
AF4
B
360 371Right-handed alpha
Helix 50
AF5
B
371 376Right-handed alpha
Helix 51
AF6
B
385 395Right-handed alpha
Helix 52
AF7
B
398 402Right-handed 310
Helix 53
AF8
B
403 424Right-handed alpha
Helix 54
AF9
B
427 432Right-handed alpha
Helix 55
AG1
B
432 442Right-handed alpha
Helix 56
AG2
B
442 447Right-handed alpha
Helix 57
AG3
B
454 496Right-handed alpha
Helix 58
AG4
B
497 508Right-handed alpha
Helix 59
AG5
B
515 521Right-handed alpha
Helix 60
AG6
B
525 542Right-handed alpha
Helix 61
AG7
B
542 547Right-handed alpha
Helix 62
AG8
B
562 574Right-handed alpha
Helix 63
AG9
B
592 600Right-handed alpha
Helix 64
AH1
B
603 620Right-handed alpha
Helix 65
AH2
B
641 652Right-handed alpha
Helix 66
AH3
B
662 667Right-handed 310
Helix 67
AH4
B
668 675Right-handed alpha
Helix 68
AH5
B
693 698Right-handed alpha
Helix 69
AH6
B
707 711Right-handed 310
Helix 70
AH7
B
714 724Right-handed alpha
Helix 71
AH8
B
767 777Right-handed alpha
Helix 72
AH9
B
784 789Right-handed alpha
Helix 73
AI1
B
799 820Right-handed alpha
Helix 74
AI2
B
830 842Right-handed alpha
Helix 75
AI3
B
848 859Right-handed alpha
Helix 76
AI4
B
864 870Right-handed alpha
Helix 77
AI5
C
175 180Right-handed alpha
Helix 78
AI6
C
185 192Right-handed alpha
Helix 79
AI7
C
200 212Right-handed alpha
Helix 80
AI8
C
230 242Right-handed alpha
Helix 81
AI9
C
259 264Right-handed alpha
Helix 82
AJ1
C
272 286Right-handed alpha
Helix 83
AJ2
C
297 301Right-handed 310
Helix 84
AJ3
C
314 316Right-handed 310
Helix 85
AJ4
C
317 322Right-handed alpha
Helix 86
AJ5
C
333 341Right-handed alpha
Helix 87
AJ6
C
344 349Right-handed alpha
Helix 88
AJ7
C
360 371Right-handed alpha
Helix 89
AJ8
C
371 378Right-handed alpha
Helix 90
AJ9
C
385 395Right-handed alpha
Helix 91
AK1
C
398 402Right-handed 310
Helix 92
AK2
C
403 424Right-handed alpha
Helix 93
AK3
C
427 447Right-handed alpha
Helix 94
AK4
C
454 468Right-handed alpha
Helix 95
AK5
C
468 508Right-handed alpha
Helix 96
AK6
C
515 522Right-handed alpha
Helix 97
AK7
C
530 542Right-handed alpha
Helix 98
AK8
C
542 548Right-handed alpha
Helix 99
AK9
C
562 574Right-handed alpha
Helix 100
AL1
C
592 600Right-handed alpha
Helix 101
AL2
C
603 620Right-handed alpha
Helix 102
AL3
C
641 652Right-handed alpha
Helix 103
AL4
C
654 656Right-handed 310
Helix 104
AL5
C
662 667Right-handed 310
Helix 105
AL6
C
668 675Right-handed alpha
Helix 106
AL7
C
693 698Right-handed alpha
Helix 107
AL8
C
714 724Right-handed alpha
Helix 108
AL9
C
767 777Right-handed alpha
Helix 109
AM1
C
784 789Right-handed alpha
Helix 110
AM2
C
800 820Right-handed alpha
Helix 111
AM3
C
830 842Right-handed alpha
Helix 112
AM4
C
848 859Right-handed alpha
Helix 113
AM5
C
860 869Right-handed alpha
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There are 12 sheets in PDB entry 5D4W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
253 258anti-parallel
Strand 3
A
290 295parallel
Strand 4
A
327 331parallel
Strand 5
A
220 222parallel
Strand 6
A
353 355parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 747first strand
Strand 2
A
629 633parallel
Strand 3
A
793 794parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 659first strand
Strand 2
A
702 703parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
827 829first strand
Strand 2
A
878 881parallel
Strand 3
A
887 889anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
253 257anti-parallel
Strand 3
B
290 295parallel
Strand 4
B
327 331parallel
Strand 5
B
218 222parallel
Strand 6
B
351 355parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
658 659first strand
Strand 2
B
702 703parallel
Strand 3
B
742 747parallel
Strand 4
B
630 633parallel
Strand 5
B
792 794parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
827 829first strand
Strand 2
B
878 881parallel
Strand 3
B
887 889anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 184first strand
Strand 2
C
253 258anti-parallel
Strand 3
C
290 295parallel
Strand 4
C
327 331parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
220 222first strand
Strand 2
C
353 355parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
744 747first strand
Strand 2
C
630 633parallel
Strand 3
C
792 794parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
658 659first strand
Strand 2
C
702 703parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
826 829first strand
Strand 2
C
877 881parallel
Strand 3
C
887 889anti-parallel
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