Analysis of interatomic Contacts of Structural Units in PDB entry:
5D4Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D4Z entry

There are 32 chains in PDB entry 5D4Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 92LYS 196
B
 VAL 92LYS 196
C
 VAL 92LYS 196
D
 VAL 92PHE 192
E
 VAL 92LYS 196
F
 VAL 92LYS 196
G
 VAL 92LYS 196
H
 VAL 92GLU 193
I
 VAL 92LYS 196
J
 VAL 92GLN 194
K
 VAL 92LYS 196
L
 VAL 92LYS 196
M
 VAL 92LYS 196
N
 VAL 92GLU 193
O
 VAL 92LYS 196
P
 VAL 92VAL 191
Q
 VAL 92LYS 196
R
 VAL 92LYS 196
T
 VAL 92LYS 196
U
 VAL 92GLN 194
V
 VAL 92LYS 196
W
 VAL 92LYS 196
X
 VAL 92LYS 196
Y
 VAL 92LYS 196
Z
 VAL 92VAL 191
1
 VAL 92LYS 196
2
 VAL 92PHE 192
3
 VAL 92VAL 191
4
 VAL 92VAL 191
5
 VAL 92VAL 191
6
 VAL 92PHE 192
7
 VAL 92LYS 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are210 helices in PDB entry 5D4Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
92 105Right-handed alpha
Helix 2
AA2
A
115 121Right-handed alpha
Helix 3
AA3
A
123 132Right-handed alpha
Helix 4
AA4
A
138 148Right-handed alpha
Helix 5
AA5
A
152 157Right-handed 310
Helix 6
AA6
A
169 175Right-handed alpha
Helix 7
AA7
A
177 196Right-handed alpha
Helix 8
AA8
B
93 106Right-handed alpha
Helix 9
AA9
B
112 121Right-handed alpha
Helix 10
AB1
B
123 132Right-handed alpha
Helix 11
AB2
B
138 149Right-handed alpha
Helix 12
AB3
B
152 158Right-handed 310
Helix 13
AB4
B
169 175Right-handed alpha
Helix 14
AB5
B
177 195Right-handed alpha
Helix 15
AB6
C
93 105Right-handed alpha
Helix 16
AB7
C
112 121Right-handed alpha
Helix 17
AB8
C
123 133Right-handed alpha
Helix 18
AB9
C
138 149Right-handed alpha
Helix 19
AC1
C
152 157Right-handed alpha
Helix 20
AC2
C
169 175Right-handed alpha
Helix 21
AC3
C
177 196Right-handed alpha
Helix 22
AC4
D
93 106Right-handed alpha
Helix 23
AC5
D
112 119Right-handed alpha
Helix 24
AC6
D
123 133Right-handed alpha
Helix 25
AC7
D
138 149Right-handed alpha
Helix 26
AC8
D
152 157Right-handed alpha
Helix 27
AC9
D
169 175Right-handed alpha
Helix 28
AD1
D
177 191Right-handed alpha
Helix 29
AD2
E
93 105Right-handed alpha
Helix 30
AD3
E
112 121Right-handed alpha
Helix 31
AD4
E
123 132Right-handed alpha
Helix 32
AD5
E
138 147Right-handed alpha
Helix 33
AD6
E
153 158Right-handed alpha
Helix 34
AD7
E
169 175Right-handed alpha
Helix 35
AD8
E
177 195Right-handed alpha
Helix 36
AD9
F
93 107Right-handed alpha
Helix 37
AE1
F
112 121Right-handed alpha
Helix 38
AE2
F
123 132Right-handed alpha
Helix 39
AE3
F
138 149Right-handed alpha
Helix 40
AE4
F
152 158Right-handed 310
Helix 41
AE5
F
169 175Right-handed alpha
Helix 42
AE6
F
177 194Right-handed alpha
Helix 43
AE7
G
93 106Right-handed alpha
Helix 44
AE8
G
116 121Right-handed alpha
Helix 45
AE9
G
125 133Right-handed alpha
Helix 46
AF1
G
138 147Right-handed alpha
Helix 47
AF2
G
148 150Right-handed 310
Helix 48
AF3
G
153 158Right-handed alpha
Helix 49
AF4
G
169 176Right-handed alpha
Helix 50
AF5
G
177 192Right-handed alpha
Helix 51
AF6
G
193 195Right-handed 310
Helix 52
AF7
H
93 106Right-handed alpha
Helix 53
AF8
H
112 121Right-handed alpha
Helix 54
AF9
H
123 132Right-handed alpha
Helix 55
AG1
H
138 149Right-handed alpha
Helix 56
AG2
H
152 157Right-handed 310
Helix 57
AG3
H
169 176Right-handed alpha
Helix 58
AG4
H
181 191Right-handed alpha
Helix 59
AG5
I
94 102Right-handed alpha
Helix 60
AG6
I
103 106Right-handed 310
Helix 61
AG7
I
125 131Right-handed alpha
Helix 62
AG8
I
138 150Right-handed alpha
Helix 63
AG9
I
169 176Right-handed alpha
Helix 64
AH1
I
181 188Right-handed alpha
Helix 65
AH2
J
94 104Right-handed alpha
Helix 66
AH3
J
112 121Right-handed alpha
Helix 67
AH4
J
124 131Right-handed 310
Helix 68
AH5
J
138 150Right-handed alpha
Helix 69
AH6
J
152 156Right-handed 310
Helix 70
AH7
J
177 194Right-handed alpha
Helix 71
AH8
K
93 105Right-handed alpha
Helix 72
AH9
K
112 116Right-handed 310
Helix 73
AI1
K
138 150Right-handed alpha
Helix 74
AI2
K
154 158Right-handed 310
Helix 75
AI3
K
169 175Right-handed alpha
Helix 76
AI4
K
177 182Right-handed alpha
Helix 77
AI5
K
182 192Right-handed alpha
Helix 78
AI6
L
94 106Right-handed alpha
Helix 79
AI7
L
115 120Right-handed alpha
Helix 80
AI8
L
123 133Right-handed alpha
Helix 81
AI9
L
138 149Right-handed alpha
Helix 82
AJ1
L
152 157Right-handed 310
Helix 83
AJ2
L
177 192Right-handed alpha
Helix 84
AJ3
M
93 103Right-handed alpha
Helix 85
AJ4
M
104 106Right-handed 310
Helix 86
AJ5
M
113 118Right-handed alpha
Helix 87
AJ6
M
125 129Right-handed 310
Helix 88
AJ7
M
138 148Right-handed alpha
Helix 89
AJ8
M
152 157Right-handed alpha
Helix 90
AJ9
M
169 173Right-handed 310
Helix 91
AK1
M
177 190Right-handed alpha
Helix 92
AK2
N
93 105Right-handed alpha
Helix 93
AK3
N
112 121Right-handed alpha
Helix 94
AK4
N
123 132Right-handed alpha
Helix 95
AK5
N
138 149Right-handed alpha
Helix 96
AK6
N
152 156Right-handed 310
Helix 97
AK7
N
183 191Right-handed alpha
Helix 98
AK8
O
93 106Right-handed alpha
Helix 99
AK9
O
115 120Right-handed alpha
Helix 100
AL1
O
138 147Right-handed alpha
Helix 101
AL2
O
177 186Right-handed alpha
Helix 102
AL3
O
186 191Right-handed alpha
Helix 103
AL4
P
93 107Right-handed alpha
Helix 104
AL5
P
116 121Right-handed alpha
Helix 105
AL6
P
127 132Right-handed alpha
Helix 106
AL7
P
138 147Right-handed alpha
Helix 107
AL8
P
148 150Right-handed 310
Helix 108
AL9
P
152 157Right-handed 310
Helix 109
AM1
Q
93 107Right-handed alpha
Helix 110
AM2
Q
112 121Right-handed alpha
Helix 111
AM3
Q
123 132Right-handed alpha
Helix 112
AM4
Q
138 149Right-handed alpha
Helix 113
AM5
Q
153 158Right-handed alpha
Helix 114
AM6
Q
169 176Right-handed alpha
Helix 115
AM7
Q
177 196Right-handed alpha
Helix 116
AM8
R
94 106Right-handed alpha
Helix 117
AM9
R
112 120Right-handed alpha
Helix 118
AN1
R
123 133Right-handed alpha
Helix 119
AN2
R
138 149Right-handed alpha
Helix 120
AN3
R
152 157Right-handed alpha
Helix 121
AN4
R
169 175Right-handed alpha
Helix 122
AN5
R
177 195Right-handed alpha
Helix 123
AN6
T
93 105Right-handed alpha
Helix 124
AN7
T
112 121Right-handed alpha
Helix 125
AN8
T
123 132Right-handed alpha
Helix 126
AN9
T
138 150Right-handed alpha
Helix 127
AO1
T
152 158Right-handed 310
Helix 128
AO2
T
169 175Right-handed alpha
Helix 129
AO3
T
177 195Right-handed alpha
Helix 130
AO4
U
93 105Right-handed alpha
Helix 131
AO5
U
112 120Right-handed alpha
Helix 132
AO6
U
123 132Right-handed alpha
Helix 133
AO7
U
138 149Right-handed alpha
Helix 134
AO8
U
152 157Right-handed 310
Helix 135
AO9
U
169 175Right-handed alpha
Helix 136
AP1
U
177 192Right-handed alpha
Helix 137
AP2
V
93 106Right-handed alpha
Helix 138
AP3
V
113 121Right-handed alpha
Helix 139
AP4
V
123 133Right-handed alpha
Helix 140
AP5
V
138 149Right-handed alpha
Helix 141
AP6
V
152 158Right-handed 310
Helix 142
AP7
V
169 175Right-handed alpha
Helix 143
AP8
V
177 195Right-handed alpha
Helix 144
AP9
W
93 105Right-handed alpha
Helix 145
AQ1
W
112 120Right-handed alpha
Helix 146
AQ2
W
123 132Right-handed alpha
Helix 147
AQ3
W
138 149Right-handed alpha
Helix 148
AQ4
W
152 157Right-handed 310
Helix 149
AQ5
W
169 175Right-handed alpha
Helix 150
AQ6
W
177 196Right-handed alpha
Helix 151
AQ7
X
93 103Right-handed alpha
Helix 152
AQ8
X
114 120Right-handed alpha
Helix 153
AQ9
X
125 132Right-handed alpha
Helix 154
AR1
X
138 149Right-handed alpha
Helix 155
AR2
X
153 157Right-handed 310
Helix 156
AR3
X
169 175Right-handed alpha
Helix 157
AR4
X
180 196Right-handed alpha
Helix 158
AR5
Y
93 105Right-handed alpha
Helix 159
AR6
Y
113 121Right-handed alpha
Helix 160
AR7
Y
125 132Right-handed alpha
Helix 161
AR8
Y
138 149Right-handed alpha
Helix 162
AR9
Y
153 158Right-handed 310
Helix 163
AS1
Y
169 176Right-handed alpha
Helix 164
AS2
Y
177 189Right-handed alpha
Helix 165
AS3
Y
190 193Right-handed 310
Helix 166
AS4
Z
94 107Right-handed alpha
Helix 167
AS5
Z
115 121Right-handed alpha
Helix 168
AS6
Z
126 132Right-handed alpha
Helix 169
AS7
Z
138 148Right-handed alpha
Helix 170
AS8
Z
153 157Right-handed 310
Helix 171
AS9
Z
171 175Right-handed 310
Helix 172
AT1
Z
177 186Right-handed 310
Helix 173
AT2
1
93 104Right-handed alpha
Helix 174
AT3
1
113 121Right-handed alpha
Helix 175
AT4
1
123 132Right-handed alpha
Helix 176
AT5
1
138 149Right-handed alpha
Helix 177
AT6
1
152 158Right-handed alpha
Helix 178
AT7
1
169 175Right-handed alpha
Helix 179
AT8
1
181 192Right-handed alpha
Helix 180
AT9
2
94 105Right-handed alpha
Helix 181
AU1
2
125 133Right-handed alpha
Helix 182
AU2
2
138 147Right-handed alpha
Helix 183
AU3
2
169 175Right-handed alpha
Helix 184
AU4
2
177 182Right-handed alpha
Helix 185
AU5
2
184 192Right-handed alpha
Helix 186
AU6
3
93 106Right-handed alpha
Helix 187
AU7
3
112 121Right-handed alpha
Helix 188
AU8
3
125 132Right-handed alpha
Helix 189
AU9
3
138 150Right-handed alpha
Helix 190
AV1
3
153 157Right-handed 310
Helix 191
AV2
3
172 176Right-handed 310
Helix 192
AV3
3
177 191Right-handed alpha
Helix 193
AV4
4
93 105Right-handed alpha
Helix 194
AV5
4
113 121Right-handed alpha
Helix 195
AV6
4
123 130Right-handed alpha
Helix 196
AV7
4
138 148Right-handed alpha
Helix 197
AV8
4
153 157Right-handed 310
Helix 198
AV9
4
182 189Right-handed alpha
Helix 199
AW1
5
94 107Right-handed alpha
Helix 200
AW2
5
116 121Right-handed alpha
Helix 201
AW3
5
138 150Right-handed alpha
Helix 202
AW4
5
153 158Right-handed alpha
Helix 203
AW5
5
183 190Right-handed alpha
Helix 204
AW6
6
96 105Right-handed alpha
Helix 205
AW7
6
138 145Right-handed alpha
Helix 206
AW8
6
145 150Right-handed alpha
Helix 207
AW9
6
177 191Right-handed alpha
Helix 208
AX1
7
96 105Right-handed alpha
Helix 209
AX2
7
144 149Right-handed alpha
Helix 210
AX3
7
152 157Right-handed 310
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There are no sheets in PDB entry 5D4Z
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