Analysis of interatomic Contacts of Structural Units in PDB entry:
5D5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D5D entry

There is 1 chain in PDB entry 5D5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 40PHE 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 5D5D. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
469 472Right-handed 310
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There are 2 sheets in PDB entry 5D5D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 54first strand
Strand 2
A
66 81anti-parallel
Strand 3
A
84 95anti-parallel
Strand 4
A
123 135anti-parallel
Strand 5
A
145 154anti-parallel
Strand 6
A
162 173anti-parallel
Strand 7
A
177 184anti-parallel
Strand 8
A
205 216anti-parallel
Strand 9
A
219 230anti-parallel
Strand 10
A
248 261anti-parallel
Strand 11
A
272 293anti-parallel
Strand 12
A
296 319anti-parallel
Strand 13
A
324 333anti-parallel
Strand 14
A
377 388anti-parallel
Strand 15
A
392 402anti-parallel
Strand 16
A
425 438anti-parallel
Strand 17
A
456 467anti-parallel
Strand 18
A
479 489anti-parallel
Strand 19
A
42 54anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 354first strand
Strand 2
A
363 364anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il