Analysis of interatomic Contacts of Structural Units in PDB entry:
5D5H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D5H entry

There is 1 chain in PDB entry 5D5H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 17THR 704
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5D5H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 37Right-handed alpha
Helix 2
AA2
A
55 59Right-handed 310
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
89 101Right-handed alpha
Helix 5
AA5
A
113 128Right-handed alpha
Helix 6
AA6
A
142 152Right-handed alpha
Helix 7
AA7
A
157 186Right-handed alpha
Helix 8
AA8
A
193 213Right-handed alpha
Helix 9
AA9
A
253 257Right-handed 310
Helix 10
AB1
A
273 283Right-handed alpha
Helix 11
AB2
A
308 321Right-handed alpha
Helix 12
AB3
A
323 337Right-handed alpha
Helix 13
AB4
A
351 367Right-handed alpha
Helix 14
AB5
A
368 371Right-handed 310
Helix 15
AB6
A
401 409Right-handed alpha
Helix 16
AB7
A
410 412Right-handed 310
Helix 17
AB8
A
413 430Right-handed alpha
Helix 18
AB9
A
465 470Right-handed 310
Helix 19
AC1
A
518 529Right-handed alpha
Helix 20
AC2
A
536 547Right-handed alpha
Helix 21
AC3
A
560 574Right-handed alpha
Helix 22
AC4
A
575 578Right-handed 310
Helix 23
AC5
A
579 596Right-handed alpha
Helix 24
AC6
A
599 610Right-handed alpha
Helix 25
AC7
A
619 622Right-handed 310
Helix 26
AC8
A
623 630Right-handed alpha
Helix 27
AC9
A
637 642Right-handed alpha
Helix 28
AD1
A
694 704Right-handed alpha
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There are 5 sheets in PDB entry 5D5H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
19 23parallel
Strand 3
A
105 108parallel
Strand 4
A
133 135parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
84 85anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
249 251parallel
Strand 3
A
238 246anti-parallel
Strand 4
A
451 460anti-parallel
Strand 5
A
435 448anti-parallel
Strand 6
A
288 301anti-parallel
Strand 7
A
498 510anti-parallel
Strand 8
A
217 226anti-parallel
Strand 9
A
238 246anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 553first strand
Strand 2
A
556 559anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 648first strand
Strand 2
A
654 660anti-parallel
Strand 3
A
663 670anti-parallel
Strand 4
A
678 683anti-parallel
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