Analysis of interatomic Contacts of Structural Units in PDB entry:
5D5N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D5N entry

There are 2 chains in PDB entry 5D5N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3ALA 171
B
 LEU 59GLN 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5D5N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 20Right-handed alpha
Helix 2
AA2
A
22 24Right-handed 310
Helix 3
AA3
A
30 37Right-handed alpha
Helix 4
AA4
A
54 67Right-handed alpha
Helix 5
AA5
A
115 123Right-handed alpha
Helix 6
AA6
A
155 170Right-handed alpha
Helix 7
AA7
B
60 71Right-handed alpha
Helix 8
AA8
B
71 82Right-handed alpha
Helix 9
AA9
B
120 122Right-handed 310
Helix 10
AB1
B
133 143Right-handed alpha
Helix 11
AB2
B
144 147Right-handed 310
Helix 12
AB3
B
151 157Right-handed alpha
Helix 13
AB4
B
161 168Right-handed alpha
Helix 14
AB5
B
171 185Right-handed alpha
Helix 15
AB6
B
213 224Right-handed alpha
Helix 16
AB7
B
256 267Right-handed alpha
Helix 17
AB8
B
270 280Right-handed alpha
Helix 18
AB9
B
280 288Right-handed alpha
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There are 5 sheets in PDB entry 5D5N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
43 47anti-parallel
Strand 3
A
81 86anti-parallel
Strand 4
A
71 76anti-parallel
Strand 5
A
111 114anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
144 152anti-parallel
Strand 3
A
130 137anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
144 152anti-parallel
Strand 3
B
84 85anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
113 118anti-parallel
Strand 3
B
105 110anti-parallel
Strand 4
B
210 212anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
228 235anti-parallel
Strand 3
B
238 245anti-parallel
Strand 4
B
198 205anti-parallel
Strand 5
B
188 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il