Analysis of interatomic Contacts of Structural Units in PDB entry:
5D67


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D67 entry

There are 4 chains in PDB entry 5D67 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 1092
B
 GLY 0SER 1091
C
 GLY 0SER 1091
D
 ALA 1010ALA 1104
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5D67. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 1025Right-handed alpha
Helix 2
AA2
A
1025 1037Right-handed alpha
Helix 3
AA3
A
1045 1057Right-handed alpha
Helix 4
AA4
A
1061 1071Right-handed alpha
Helix 5
AA5
A
1082 1090Right-handed alpha
Helix 6
AA6
B
1008 1025Right-handed alpha
Helix 7
AA7
B
1025 1037Right-handed alpha
Helix 8
AA8
B
1045 1057Right-handed alpha
Helix 9
AA9
B
1061 1071Right-handed alpha
Helix 10
AB1
B
1082 1090Right-handed alpha
Helix 11
AB2
C
1008 1025Right-handed alpha
Helix 12
AB3
C
1025 1037Right-handed alpha
Helix 13
AB4
C
1045 1057Right-handed alpha
Helix 14
AB5
C
1061 1071Right-handed alpha
Helix 15
AB6
C
1082 1090Right-handed alpha
Helix 16
AB7
D
1011 1025Right-handed alpha
Helix 17
AB8
D
1025 1037Right-handed alpha
Helix 18
AB9
D
1045 1057Right-handed alpha
Helix 19
AC1
D
1061 1072Right-handed alpha
Helix 20
AC2
D
1082 1091Right-handed alpha
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There are 4 sheets in PDB entry 5D67. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1043 1044first strand
Strand 2
A
1080 1081anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1043 1044first strand
Strand 2
B
1080 1081anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1043 1044first strand
Strand 2
C
1080 1081anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1043 1044first strand
Strand 2
D
1080 1081anti-parallel
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