Analysis of interatomic Contacts of Structural Units in PDB entry:
5D68


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D68 entry

There are 3 chains in PDB entry 5D68 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 288MET 730
B
 ASP 288SER 736
C
 ASP 288VAL 655
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 5D68. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
290 298Right-handed alpha
Helix 2
AA2
A
300 310Right-handed alpha
Helix 3
AA3
A
323 331Right-handed alpha
Helix 4
AA4
A
333 343Right-handed alpha
Helix 5
AA5
A
357 365Right-handed alpha
Helix 6
AA6
A
367 377Right-handed alpha
Helix 7
AA7
A
391 400Right-handed alpha
Helix 8
AA8
A
403 413Right-handed alpha
Helix 9
AA9
A
438 442Right-handed 310
Helix 10
AB1
A
443 451Right-handed alpha
Helix 11
AB2
A
454 459Right-handed alpha
Helix 12
AB3
A
479 486Right-handed alpha
Helix 13
AB4
A
486 495Right-handed alpha
Helix 14
AB5
A
498 502Right-handed 310
Helix 15
AB6
A
515 520Right-handed alpha
Helix 16
AB7
A
524 542Right-handed alpha
Helix 17
AB8
A
547 564Right-handed alpha
Helix 18
AB9
A
567 572Right-handed alpha
Helix 19
AC1
A
577 582Right-handed alpha
Helix 20
AC2
A
586 590Right-handed 310
Helix 21
AC3
A
593 596Right-handed 310
Helix 22
AC4
A
597 610Right-handed alpha
Helix 23
AC5
A
617 631Right-handed alpha
Helix 24
AC6
A
714 728Right-handed alpha
Helix 25
AC7
B
290 299Right-handed alpha
Helix 26
AC8
B
300 310Right-handed alpha
Helix 27
AC9
B
323 331Right-handed alpha
Helix 28
AD1
B
333 343Right-handed alpha
Helix 29
AD2
B
357 365Right-handed alpha
Helix 30
AD3
B
367 377Right-handed alpha
Helix 31
AD4
B
391 400Right-handed alpha
Helix 32
AD5
B
403 413Right-handed alpha
Helix 33
AD6
B
438 442Right-handed 310
Helix 34
AD7
B
443 451Right-handed alpha
Helix 35
AD8
B
454 459Right-handed alpha
Helix 36
AD9
B
479 486Right-handed alpha
Helix 37
AE1
B
486 495Right-handed alpha
Helix 38
AE2
B
498 502Right-handed 310
Helix 39
AE3
B
515 520Right-handed alpha
Helix 40
AE4
B
524 542Right-handed alpha
Helix 41
AE5
B
547 564Right-handed alpha
Helix 42
AE6
B
567 572Right-handed alpha
Helix 43
AE7
B
577 582Right-handed alpha
Helix 44
AE8
B
586 590Right-handed 310
Helix 45
AE9
B
593 596Right-handed 310
Helix 46
AF1
B
597 610Right-handed alpha
Helix 47
AF2
B
617 631Right-handed alpha
Helix 48
AF3
B
714 728Right-handed alpha
Helix 49
AF4
C
290 299Right-handed alpha
Helix 50
AF5
C
300 310Right-handed alpha
Helix 51
AF6
C
323 331Right-handed alpha
Helix 52
AF7
C
333 343Right-handed alpha
Helix 53
AF8
C
357 365Right-handed alpha
Helix 54
AF9
C
367 377Right-handed alpha
Helix 55
AG1
C
391 400Right-handed alpha
Helix 56
AG2
C
403 413Right-handed alpha
Helix 57
AG3
C
438 442Right-handed 310
Helix 58
AG4
C
443 451Right-handed alpha
Helix 59
AG5
C
454 459Right-handed alpha
Helix 60
AG6
C
479 486Right-handed alpha
Helix 61
AG7
C
486 495Right-handed alpha
Helix 62
AG8
C
498 502Right-handed 310
Helix 63
AG9
C
515 521Right-handed alpha
Helix 64
AH1
C
524 542Right-handed alpha
Helix 65
AH2
C
547 564Right-handed alpha
Helix 66
AH3
C
567 572Right-handed alpha
Helix 67
AH4
C
577 582Right-handed alpha
Helix 68
AH5
C
586 590Right-handed 310
Helix 69
AH6
C
593 596Right-handed 310
Helix 70
AH7
C
597 610Right-handed alpha
Helix 71
AH8
C
617 631Right-handed alpha
Helix 72
AH9
C
714 728Right-handed alpha
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There are 7 sheets in PDB entry 5D68. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 435first strand
Strand 2
A
421 425anti-parallel
Strand 3
A
505 510parallel
Strand 4
A
461 467anti-parallel
Strand 5
A
470 473anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
677 682first strand
Strand 2
A
666 671anti-parallel
Strand 3
A
656 662anti-parallel
Strand 4
A
638 644anti-parallel
Strand 5
A
707 711anti-parallel
Strand 6
A
696 701anti-parallel
Strand 7
A
686 690anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
431 436first strand
Strand 2
B
420 425anti-parallel
Strand 3
B
505 510parallel
Strand 4
B
461 467anti-parallel
Strand 5
B
470 473anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
677 682first strand
Strand 2
B
666 671anti-parallel
Strand 3
B
656 662anti-parallel
Strand 4
B
638 644anti-parallel
Strand 5
B
707 711anti-parallel
Strand 6
B
696 701anti-parallel
Strand 7
B
686 690anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
431 436first strand
Strand 2
C
420 425anti-parallel
Strand 3
C
505 510parallel
Strand 4
C
461 467anti-parallel
Strand 5
C
470 473anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
638 644first strand
Strand 2
C
656 662anti-parallel
Strand 3
C
666 671anti-parallel
Strand 4
C
677 682anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
686 690first strand
Strand 2
C
696 701anti-parallel
Strand 3
C
707 711anti-parallel
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