Analysis of interatomic Contacts of Structural Units in PDB entry:
5D6A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D6A entry

There is 1 chain in PDB entry 5D6A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2HIS 551
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5D6A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 10Right-handed alpha
Helix 2
AA2
A
15 23Right-handed 310
Helix 3
AA3
A
56 58Right-handed 310
Helix 4
AA4
A
60 66Right-handed 310
Helix 5
AA5
A
67 86Right-handed alpha
Helix 6
AA6
A
130 140Right-handed alpha
Helix 7
AA7
A
140 149Right-handed alpha
Helix 8
AA8
A
150 155Right-handed 310
Helix 9
AA9
A
156 176Right-handed alpha
Helix 10
AB1
A
212 214Right-handed 310
Helix 11
AB2
A
246 257Right-handed alpha
Helix 12
AB3
A
314 329Right-handed alpha
Helix 13
AB4
A
339 341Right-handed 310
Helix 14
AB5
A
342 347Right-handed alpha
Helix 15
AB6
A
349 356Right-handed alpha
Helix 16
AB7
A
365 378Right-handed alpha
Helix 17
AB8
A
389 393Right-handed 310
Helix 18
AB9
A
409 420Right-handed alpha
Helix 19
AC1
A
443 452Right-handed alpha
Helix 20
AC2
A
481 496Right-handed alpha
Helix 21
AC3
A
504 513Right-handed alpha
Helix 22
AC4
A
531 541Right-handed alpha
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There are 10 sheets in PDB entry 5D6A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
47 54anti-parallel
Strand 4
A
113 120anti-parallel
Strand 5
A
92 93anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
47 54anti-parallel
Strand 4
A
113 120anti-parallel
Strand 5
A
107 109anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
260 261anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
128 129anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 221first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
182 187anti-parallel
Strand 4
A
270 272anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
199 202anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
333 337parallel
Strand 3
A
380 384parallel
Strand 4
A
236 240parallel
Strand 5
A
397 401parallel
Strand 6
A
406 408anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
308 310anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 502first strand
Strand 2
A
439 441anti-parallel
Strand 3
A
547 548anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 459first strand
Strand 2
A
463 466anti-parallel
Strand 3
A
469 472anti-parallel
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