Analysis of interatomic Contacts of Structural Units in PDB entry:
5D6B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D6B entry

There is 1 chain in PDB entry 5D6B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 49LYS 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5D6B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 79Right-handed alpha
Helix 2
AA2
A
83 87Right-handed 310
Helix 3
AA3
A
89 107Right-handed alpha
Helix 4
AA4
A
108 111Right-handed 310
Helix 5
AA5
A
113 129Right-handed alpha
Helix 6
AA6
A
132 136Right-handed 310
Helix 7
AA7
A
146 165Right-handed alpha
Helix 8
AA8
A
186 206Right-handed alpha
Helix 9
AA9
A
206 225Right-handed alpha
Helix 10
AB1
A
244 265Right-handed alpha
Helix 11
AB2
A
265 270Right-handed alpha
Helix 12
AB3
A
288 302Right-handed alpha
Helix 13
AB4
A
310 317Right-handed alpha
Helix 14
AB5
A
318 346Right-handed alpha
Helix 15
AB6
A
374 400Right-handed alpha
Helix 16
AB7
A
408 434Right-handed alpha
Helix 17
AB8
A
435 438Right-handed 310
Helix 18
AB9
A
441 452Right-handed alpha
Helix 19
AC1
A
453 458Right-handed 310
Helix 20
AC2
A
459 464Right-handed alpha
Helix 21
AC3
A
464 479Right-handed alpha
Helix 22
AC4
A
481 489Right-handed alpha
Helix 23
AC5
A
493 501Right-handed alpha
Helix 24
AC6
A
502 506Right-handed 310
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There are 4 sheets in PDB entry 5D6B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
58 63anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 234first strand
Strand 2
A
237 243anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
306 307parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
439 440anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il