Analysis of interatomic Contacts of Structural Units in PDB entry:
5D6C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D6C entry

There are 4 chains in PDB entry 5D6C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1GLU 213
B
 GLU 1PRO 212
H
 GLU 1CYS 218
L
 ASP 1GLU 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5D6C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 29Right-handed 310
Helix 2
AA2
A
79 83Right-handed 310
Helix 3
AA3
A
121 127Right-handed alpha
Helix 4
AA4
A
183 188Right-handed alpha
Helix 5
AA5
B
28 32Right-handed 310
Helix 6
AA6
B
73 75Right-handed 310
Helix 7
AA7
B
83 87Right-handed 310
Helix 8
AA8
B
155 157Right-handed 310
Helix 9
AA9
B
186 189Right-handed 310
Helix 10
AB1
B
200 203Right-handed 310
Helix 11
AB2
H
28 32Right-handed 310
Helix 12
AB3
H
83 87Right-handed 310
Helix 13
AB4
H
155 157Right-handed 310
Helix 14
AB5
H
186 188Right-handed 310
Helix 15
AB6
H
200 203Right-handed 310
Helix 16
AB7
L
85 89Right-handed 310
Helix 17
AB8
L
127 132Right-handed alpha
Helix 18
AB9
L
189 194Right-handed alpha
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There are 20 sheets in PDB entry 5D6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
62 67anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
102 107parallel
Strand 3
A
84 90anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
45 49anti-parallel
Strand 6
A
53 54anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
129 139anti-parallel
Strand 3
A
173 182anti-parallel
Strand 4
A
159 163anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
145 150anti-parallel
Strand 3
A
191 197anti-parallel
Strand 4
A
205 210anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
106 110parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
57 59anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
106 110parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
99 102anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
134 144anti-parallel
Strand 3
B
175 184anti-parallel
Strand 4
B
162 164anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
134 144anti-parallel
Strand 3
B
175 184anti-parallel
Strand 4
B
168 169anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
193 199anti-parallel
Strand 3
B
204 210anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
106 110parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
106 110parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
99 100anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
119 123first strand
Strand 2
H
134 144anti-parallel
Strand 3
H
175 184anti-parallel
Strand 4
H
162 164anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
119 123first strand
Strand 2
H
134 144anti-parallel
Strand 3
H
175 184anti-parallel
Strand 4
H
168 169anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
150 153first strand
Strand 2
H
193 199anti-parallel
Strand 3
H
204 210anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
76 81anti-parallel
Strand 4
L
68 73anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
108 113parallel
Strand 3
L
90 96anti-parallel
Strand 4
L
39 44anti-parallel
Strand 5
L
51 55anti-parallel
Strand 6
L
59 60anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
120 124first strand
Strand 2
L
135 145anti-parallel
Strand 3
L
179 188anti-parallel
Strand 4
L
165 169anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
159 161first strand
Strand 2
L
151 156anti-parallel
Strand 3
L
197 203anti-parallel
Strand 4
L
211 216anti-parallel
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