Analysis of interatomic Contacts of Structural Units in PDB entry:
5D6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D6J entry

There are 2 chains in PDB entry 5D6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 630
B
 GLU 21GLU 94
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5D6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 32Right-handed alpha
Helix 2
AA2
A
56 74Right-handed alpha
Helix 3
AA3
A
87 100Right-handed alpha
Helix 4
AA4
A
115 127Right-handed alpha
Helix 5
AA5
A
137 146Right-handed alpha
Helix 6
AA6
A
147 148Right-handed 310
Helix 7
AA7
A
149 153Right-handed 310
Helix 8
AA8
A
160 162Right-handed 310
Helix 9
AA9
A
163 170Right-handed 310
Helix 10
AB1
A
201 216Right-handed alpha
Helix 11
AB2
A
231 239Right-handed alpha
Helix 12
AB3
A
240 245Right-handed alpha
Helix 13
AB4
A
252 259Right-handed alpha
Helix 14
AB5
A
260 268Right-handed alpha
Helix 15
AB6
A
282 293Right-handed alpha
Helix 16
AB7
A
318 330Right-handed alpha
Helix 17
AB8
A
331 333Right-handed 310
Helix 18
AB9
A
335 337Right-handed 310
Helix 19
AC1
A
346 349Right-handed 310
Helix 20
AC2
A
368 373Right-handed alpha
Helix 21
AC3
A
434 443Right-handed alpha
Helix 22
AC4
A
485 487Right-handed 310
Helix 23
AC5
A
496 508Right-handed alpha
Helix 24
AC6
A
524 526Right-handed 310
Helix 25
AC7
A
527 533Right-handed alpha
Helix 26
AC8
A
534 537Right-handed 310
Helix 27
AC9
A
563 580Right-handed alpha
Helix 28
AD1
A
603 612Right-handed alpha
Helix 29
AD2
A
614 619Right-handed alpha
Helix 30
AD3
B
45 56Right-handed alpha
Helix 31
AD4
B
59 61Right-handed 310
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There are 10 sheets in PDB entry 5D6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
12 13anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
248 250parallel
Strand 4
A
223 225parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
79 82parallel
Strand 3
A
130 133parallel
Strand 4
A
155 158parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 186first strand
Strand 2
A
196 200anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
309 312parallel
Strand 3
A
339 344parallel
Strand 4
A
351 354anti-parallel
Strand 5
A
394 395anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 367first strand
Strand 2
A
386 390anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
399 405anti-parallel
Strand 3
A
418 424anti-parallel
Strand 4
A
465 474anti-parallel
Strand 5
A
477 483anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 490first strand
Strand 2
A
493 495anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 522first strand
Strand 2
A
547 554anti-parallel
Strand 3
A
583 589parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 40first strand
Strand 2
B
23 29anti-parallel
Strand 3
B
87 93parallel
Strand 4
B
63 67anti-parallel
Strand 5
B
70 71anti-parallel
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