Analysis of interatomic Contacts of Structural Units in PDB entry:
5D6N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D6N entry

There is 1 chain in PDB entry 5D6N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3GLY 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5D6N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 32Right-handed alpha
Helix 2
AA2
A
56 74Right-handed alpha
Helix 3
AA3
A
87 100Right-handed alpha
Helix 4
AA4
A
118 127Right-handed alpha
Helix 5
AA5
A
134 145Right-handed alpha
Helix 6
AA6
A
146 148Right-handed 310
Helix 7
AA7
A
149 153Right-handed 310
Helix 8
AA8
A
160 162Right-handed 310
Helix 9
AA9
A
163 170Right-handed 310
Helix 10
AB1
A
201 216Right-handed alpha
Helix 11
AB2
A
235 245Right-handed alpha
Helix 12
AB3
A
252 259Right-handed alpha
Helix 13
AB4
A
260 268Right-handed alpha
Helix 14
AB5
A
282 293Right-handed alpha
Helix 15
AB6
A
318 330Right-handed alpha
Helix 16
AB7
A
331 333Right-handed 310
Helix 17
AB8
A
335 337Right-handed 310
Helix 18
AB9
A
346 349Right-handed 310
Helix 19
AC1
A
368 373Right-handed alpha
Helix 20
AC2
A
434 443Right-handed alpha
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There are 6 sheets in PDB entry 5D6N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
12 13anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
248 250parallel
Strand 4
A
222 225parallel
Strand 5
A
277 280parallel
Strand 6
A
307 312parallel
Strand 7
A
339 344parallel
Strand 8
A
351 354anti-parallel
Strand 9
A
394 395anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
79 82parallel
Strand 3
A
130 133parallel
Strand 4
A
155 158parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 187first strand
Strand 2
A
195 200anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 367first strand
Strand 2
A
386 390anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
399 405anti-parallel
Strand 3
A
418 424anti-parallel
Strand 4
A
465 474anti-parallel
Strand 5
A
477 480anti-parallel
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