Analysis of interatomic Contacts of Structural Units in PDB entry:
5D6O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D6O entry

There are 4 chains in PDB entry 5D6O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 349
B
 MET 1SER 349
C
 MET 1SER 349
D
 MET 1GLU 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 5D6O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 7Right-handed 310
Helix 2
AA2
A
8 13Right-handed alpha
Helix 3
AA3
A
62 69Right-handed alpha
Helix 4
AA4
A
102 110Right-handed 310
Helix 5
AA5
A
114 131Right-handed alpha
Helix 6
AA6
A
142 155Right-handed alpha
Helix 7
AA7
A
156 159Right-handed 310
Helix 8
AA8
A
172 188Right-handed alpha
Helix 9
AA9
A
189 196Right-handed 310
Helix 10
AB1
A
199 202Right-handed 310
Helix 11
AB2
A
203 218Right-handed alpha
Helix 12
AB3
A
220 226Right-handed alpha
Helix 13
AB4
A
227 233Right-handed 310
Helix 14
AB5
A
236 244Right-handed alpha
Helix 15
AB6
A
244 251Right-handed alpha
Helix 16
AB7
A
253 266Right-handed alpha
Helix 17
AB8
A
268 274Right-handed 310
Helix 18
AB9
A
276 283Right-handed alpha
Helix 19
AC1
A
300 309Right-handed alpha
Helix 20
AC2
A
323 330Right-handed 310
Helix 21
AC3
A
334 348Right-handed alpha
Helix 22
AC4
B
8 13Right-handed alpha
Helix 23
AC5
B
62 69Right-handed alpha
Helix 24
AC6
B
102 110Right-handed 310
Helix 25
AC7
B
114 131Right-handed alpha
Helix 26
AC8
B
142 155Right-handed alpha
Helix 27
AC9
B
156 159Right-handed 310
Helix 28
AD1
B
172 188Right-handed alpha
Helix 29
AD2
B
189 196Right-handed 310
Helix 30
AD3
B
199 202Right-handed 310
Helix 31
AD4
B
203 218Right-handed alpha
Helix 32
AD5
B
220 226Right-handed alpha
Helix 33
AD6
B
227 233Right-handed 310
Helix 34
AD7
B
236 244Right-handed alpha
Helix 35
AD8
B
244 250Right-handed alpha
Helix 36
AD9
B
253 266Right-handed alpha
Helix 37
AE1
B
268 274Right-handed 310
Helix 38
AE2
B
276 282Right-handed alpha
Helix 39
AE3
B
300 309Right-handed alpha
Helix 40
AE4
B
323 330Right-handed 310
Helix 41
AE5
B
334 348Right-handed alpha
Helix 42
AE6
C
8 13Right-handed alpha
Helix 43
AE7
C
62 69Right-handed alpha
Helix 44
AE8
C
102 110Right-handed 310
Helix 45
AE9
C
114 131Right-handed alpha
Helix 46
AF1
C
142 155Right-handed alpha
Helix 47
AF2
C
156 159Right-handed 310
Helix 48
AF3
C
172 188Right-handed alpha
Helix 49
AF4
C
189 196Right-handed 310
Helix 50
AF5
C
199 202Right-handed 310
Helix 51
AF6
C
203 218Right-handed alpha
Helix 52
AF7
C
220 226Right-handed alpha
Helix 53
AF8
C
227 233Right-handed 310
Helix 54
AF9
C
236 244Right-handed alpha
Helix 55
AG1
C
244 250Right-handed alpha
Helix 56
AG2
C
253 266Right-handed alpha
Helix 57
AG3
C
268 274Right-handed 310
Helix 58
AG4
C
276 282Right-handed alpha
Helix 59
AG5
C
300 309Right-handed alpha
Helix 60
AG6
C
323 330Right-handed 310
Helix 61
AG7
C
334 348Right-handed alpha
Helix 62
AG8
D
4 7Right-handed 310
Helix 63
AG9
D
8 13Right-handed alpha
Helix 64
AH1
D
62 69Right-handed alpha
Helix 65
AH2
D
102 110Right-handed 310
Helix 66
AH3
D
114 131Right-handed alpha
Helix 67
AH4
D
142 155Right-handed alpha
Helix 68
AH5
D
156 159Right-handed 310
Helix 69
AH6
D
172 188Right-handed alpha
Helix 70
AH7
D
189 196Right-handed 310
Helix 71
AH8
D
199 202Right-handed 310
Helix 72
AH9
D
203 218Right-handed alpha
Helix 73
AI1
D
220 226Right-handed alpha
Helix 74
AI2
D
227 233Right-handed 310
Helix 75
AI3
D
236 244Right-handed alpha
Helix 76
AI4
D
244 251Right-handed alpha
Helix 77
AI5
D
253 266Right-handed alpha
Helix 78
AI6
D
268 274Right-handed 310
Helix 79
AI7
D
276 282Right-handed alpha
Helix 80
AI8
D
300 309Right-handed alpha
Helix 81
AI9
D
323 330Right-handed 310
Helix 82
AJ1
D
334 348Right-handed alpha
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There are 8 sheets in PDB entry 5D6O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
35 41anti-parallel
Strand 3
A
82 86anti-parallel
Strand 4
A
51 55parallel
Strand 5
A
137 141parallel
Strand 6
A
161 165parallel
Strand 7
A
287 290parallel
Strand 8
A
315 316parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
30 31anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 19first strand
Strand 2
B
35 41anti-parallel
Strand 3
B
82 86anti-parallel
Strand 4
B
51 55parallel
Strand 5
B
137 141parallel
Strand 6
B
161 165parallel
Strand 7
B
287 290parallel
Strand 8
B
315 316parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
30 31anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 19first strand
Strand 2
C
35 41anti-parallel
Strand 3
C
82 86anti-parallel
Strand 4
C
51 55parallel
Strand 5
C
137 141parallel
Strand 6
C
161 165parallel
Strand 7
C
287 290parallel
Strand 8
C
315 316parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 24first strand
Strand 2
C
30 31anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 19first strand
Strand 2
D
35 41anti-parallel
Strand 3
D
82 86anti-parallel
Strand 4
D
51 55parallel
Strand 5
D
137 141parallel
Strand 6
D
161 165parallel
Strand 7
D
287 290parallel
Strand 8
D
315 316parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 24first strand
Strand 2
D
30 31anti-parallel
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