Analysis of interatomic Contacts of Structural Units in PDB entry:
5D6R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5D6R entry

There are 2 chains in PDB entry 5D6R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 7	SER 556
M	PRO -4	HIS 554

There are 66 helices in PDB entry 5D6R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	12	24	Right-handed alpha
Helix 2	AA2	B	37	44	Right-handed alpha
Helix 3	AA3	B	45	47	Right-handed 310
Helix 4	AA4	B	56	72	Right-handed alpha
Helix 5	AA5	B	82	87	Right-handed alpha
Helix 6	AA6	B	88	99	Right-handed alpha
Helix 7	AA7	B	110	114	Right-handed 310
Helix 8	AA8	B	123	129	Right-handed alpha
Helix 9	AA9	B	130	132	Right-handed 310
Helix 10	AB1	B	140	142	Right-handed 310
Helix 11	AB2	B	143	157	Right-handed alpha
Helix 12	AB3	B	169	174	Right-handed alpha
Helix 13	AB4	B	193	207	Right-handed alpha
Helix 14	AB5	B	216	222	Right-handed 310
Helix 15	AB6	B	223	235	Right-handed alpha
Helix 16	AB7	B	242	245	Right-handed 310
Helix 17	AB8	B	266	275	Right-handed alpha
Helix 18	AB9	B	284	288	Right-handed 310
Helix 19	AC1	B	289	293	Right-handed 310
Helix 20	AC2	B	323	333	Right-handed alpha
Helix 21	AC3	B	342	361	Right-handed alpha
Helix 22	AC4	B	372	384	Right-handed alpha
Helix 23	AC5	B	395	404	Right-handed alpha
Helix 24	AC6	B	405	408	Right-handed 310
Helix 25	AC7	B	424	436	Right-handed alpha
Helix 26	AC8	B	447	454	Right-handed alpha
Helix 27	AC9	B	456	464	Right-handed alpha
Helix 28	AD1	B	477	489	Right-handed alpha
Helix 29	AD2	B	500	507	Right-handed alpha
Helix 30	AD3	B	517	519	Right-handed 310
Helix 31	AD4	B	520	530	Right-handed alpha
Helix 32	AD5	B	542	544	Right-handed 310
Helix 33	AD6	B	545	551	Right-handed alpha
Helix 34	AD7	M	12	24	Right-handed alpha
Helix 35	AD8	M	37	44	Right-handed alpha
Helix 36	AD9	M	45	47	Right-handed 310
Helix 37	AE1	M	56	72	Right-handed alpha
Helix 38	AE2	M	82	87	Right-handed alpha
Helix 39	AE3	M	88	99	Right-handed alpha
Helix 40	AE4	M	110	114	Right-handed 310
Helix 41	AE5	M	123	129	Right-handed alpha
Helix 42	AE6	M	130	132	Right-handed 310
Helix 43	AE7	M	140	142	Right-handed 310
Helix 44	AE8	M	143	157	Right-handed alpha
Helix 45	AE9	M	169	174	Right-handed alpha
Helix 46	AF1	M	193	207	Right-handed alpha
Helix 47	AF2	M	216	222	Right-handed 310
Helix 48	AF3	M	223	235	Right-handed alpha
Helix 49	AF4	M	242	245	Right-handed 310
Helix 50	AF5	M	266	275	Right-handed alpha
Helix 51	AF6	M	284	288	Right-handed 310
Helix 52	AF7	M	289	293	Right-handed 310
Helix 53	AF8	M	323	333	Right-handed alpha
Helix 54	AF9	M	342	357	Right-handed alpha
Helix 55	AG1	M	372	384	Right-handed alpha
Helix 56	AG2	M	395	404	Right-handed alpha
Helix 57	AG3	M	405	408	Right-handed 310
Helix 58	AG4	M	424	436	Right-handed alpha
Helix 59	AG5	M	447	454	Right-handed alpha
Helix 60	AG6	M	456	464	Right-handed alpha
Helix 61	AG7	M	477	489	Right-handed alpha
Helix 62	AG8	M	500	507	Right-handed alpha
Helix 63	AG9	M	517	519	Right-handed 310
Helix 64	AH1	M	520	530	Right-handed alpha
Helix 65	AH2	M	542	544	Right-handed 310
Helix 66	AH3	M	545	551	Right-handed alpha

There are 8 sheets in PDB entry 5D6R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	176	178	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	53	first strand
Strand 2	B	28	32	parallel
Strand 3	B	75	79	parallel
Strand 4	B	102	108	parallel
Strand 5	B	162	168	parallel
Strand 6	B	134	137	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	259	first strand
Strand 2	B	238	240	parallel
Strand 3	B	210	214	parallel
Strand 4	B	277	281	parallel
Strand 5	B	299	304	parallel
Strand 6	B	318	321	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	414	first strand
Strand 2	B	388	392	parallel
Strand 3	B	440	446	parallel
Strand 4	B	467	473	parallel
Strand 5	B	535	540	parallel
Strand 6	B	511	514	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	8	10	first strand
Strand 2	M	176	178	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	50	53	first strand
Strand 2	M	28	31	parallel
Strand 3	M	75	79	parallel
Strand 4	M	102	108	parallel
Strand 5	M	162	168	parallel
Strand 6	M	134	137	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	256	259	first strand
Strand 2	M	238	240	parallel
Strand 3	M	210	214	parallel
Strand 4	M	277	281	parallel
Strand 5	M	299	304	parallel
Strand 6	M	318	321	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	412	414	first strand
Strand 2	M	388	392	parallel
Strand 3	M	440	446	parallel
Strand 4	M	467	473	parallel
Strand 5	M	535	540	parallel
Strand 6	M	511	514	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5D6R

Analysis of interatomic Contacts of Structural Units in PDB entry:
5D6R