Analysis of interatomic Contacts of Structural Units in PDB entry:
5D6S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D6S entry

There are 5 chains in PDB entry 5D6S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 370
B
 MET 1ILE 370
C
 LYS 4ILE 372
D
 MET 1ILE 370
E
 MET 1ILE 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are115 helices in PDB entry 5D6S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
27 41Right-handed alpha
Helix 3
AA3
A
50 56Right-handed alpha
Helix 4
AA4
A
57 60Right-handed 310
Helix 5
AA5
A
93 97Right-handed 310
Helix 6
AA6
A
100 118Right-handed alpha
Helix 7
AA7
A
135 143Right-handed alpha
Helix 8
AA8
A
188 194Right-handed alpha
Helix 9
AA9
A
206 209Right-handed 310
Helix 10
AB1
A
210 217Right-handed alpha
Helix 11
AB2
A
222 229Right-handed alpha
Helix 12
AB3
A
237 242Right-handed alpha
Helix 13
AB4
A
243 247Right-handed 310
Helix 14
AB5
A
256 261Right-handed alpha
Helix 15
AB6
A
263 268Right-handed alpha
Helix 16
AB7
A
271 280Right-handed alpha
Helix 17
AB8
A
282 286Right-handed 310
Helix 18
AB9
A
288 303Right-handed alpha
Helix 19
AC1
A
305 307Right-handed 310
Helix 20
AC2
A
308 319Right-handed alpha
Helix 21
AC3
A
321 336Right-handed alpha
Helix 22
AC4
A
340 349Right-handed alpha
Helix 23
AC5
A
354 368Right-handed alpha
Helix 24
AC6
B
2 14Right-handed alpha
Helix 25
AC7
B
30 41Right-handed alpha
Helix 26
AC8
B
50 56Right-handed alpha
Helix 27
AC9
B
57 60Right-handed 310
Helix 28
AD1
B
93 97Right-handed 310
Helix 29
AD2
B
100 118Right-handed alpha
Helix 30
AD3
B
135 143Right-handed alpha
Helix 31
AD4
B
188 194Right-handed alpha
Helix 32
AD5
B
206 209Right-handed 310
Helix 33
AD6
B
210 217Right-handed alpha
Helix 34
AD7
B
222 229Right-handed alpha
Helix 35
AD8
B
237 242Right-handed alpha
Helix 36
AD9
B
243 247Right-handed 310
Helix 37
AE1
B
256 261Right-handed alpha
Helix 38
AE2
B
263 268Right-handed alpha
Helix 39
AE3
B
271 280Right-handed alpha
Helix 40
AE4
B
282 286Right-handed 310
Helix 41
AE5
B
288 303Right-handed alpha
Helix 42
AE6
B
305 307Right-handed 310
Helix 43
AE7
B
308 319Right-handed alpha
Helix 44
AE8
B
321 336Right-handed alpha
Helix 45
AE9
B
340 349Right-handed alpha
Helix 46
AF1
B
354 368Right-handed alpha
Helix 47
AF2
C
5 14Right-handed alpha
Helix 48
AF3
C
27 41Right-handed alpha
Helix 49
AF4
C
50 56Right-handed alpha
Helix 50
AF5
C
57 60Right-handed 310
Helix 51
AF6
C
93 97Right-handed 310
Helix 52
AF7
C
100 118Right-handed alpha
Helix 53
AF8
C
135 143Right-handed alpha
Helix 54
AF9
C
188 194Right-handed alpha
Helix 55
AG1
C
206 209Right-handed 310
Helix 56
AG2
C
210 217Right-handed alpha
Helix 57
AG3
C
222 229Right-handed alpha
Helix 58
AG4
C
237 242Right-handed alpha
Helix 59
AG5
C
243 247Right-handed 310
Helix 60
AG6
C
258 263Right-handed alpha
Helix 61
AG7
C
265 270Right-handed alpha
Helix 62
AG8
C
273 282Right-handed alpha
Helix 63
AG9
C
284 288Right-handed 310
Helix 64
AH1
C
290 305Right-handed alpha
Helix 65
AH2
C
307 309Right-handed 310
Helix 66
AH3
C
310 321Right-handed alpha
Helix 67
AH4
C
323 338Right-handed alpha
Helix 68
AH5
C
342 351Right-handed alpha
Helix 69
AH6
C
356 370Right-handed alpha
Helix 70
AH7
D
2 14Right-handed alpha
Helix 71
AH8
D
27 41Right-handed alpha
Helix 72
AH9
D
50 56Right-handed alpha
Helix 73
AI1
D
57 60Right-handed 310
Helix 74
AI2
D
93 97Right-handed 310
Helix 75
AI3
D
100 118Right-handed alpha
Helix 76
AI4
D
135 143Right-handed alpha
Helix 77
AI5
D
188 194Right-handed alpha
Helix 78
AI6
D
206 209Right-handed 310
Helix 79
AI7
D
210 217Right-handed alpha
Helix 80
AI8
D
222 229Right-handed alpha
Helix 81
AI9
D
237 242Right-handed alpha
Helix 82
AJ1
D
243 247Right-handed 310
Helix 83
AJ2
D
256 261Right-handed alpha
Helix 84
AJ3
D
263 268Right-handed alpha
Helix 85
AJ4
D
271 280Right-handed alpha
Helix 86
AJ5
D
282 286Right-handed 310
Helix 87
AJ6
D
288 303Right-handed alpha
Helix 88
AJ7
D
305 307Right-handed 310
Helix 89
AJ8
D
308 319Right-handed alpha
Helix 90
AJ9
D
321 336Right-handed alpha
Helix 91
AK1
D
340 349Right-handed alpha
Helix 92
AK2
D
354 368Right-handed alpha
Helix 93
AK3
E
2 14Right-handed alpha
Helix 94
AK4
E
27 41Right-handed alpha
Helix 95
AK5
E
50 56Right-handed alpha
Helix 96
AK6
E
57 60Right-handed 310
Helix 97
AK7
E
93 97Right-handed 310
Helix 98
AK8
E
100 118Right-handed alpha
Helix 99
AK9
E
135 143Right-handed alpha
Helix 100
AL1
E
188 194Right-handed alpha
Helix 101
AL2
E
206 209Right-handed 310
Helix 102
AL3
E
210 217Right-handed alpha
Helix 103
AL4
E
222 229Right-handed alpha
Helix 104
AL5
E
237 242Right-handed alpha
Helix 105
AL6
E
243 247Right-handed 310
Helix 106
AL7
E
256 261Right-handed alpha
Helix 107
AL8
E
263 268Right-handed alpha
Helix 108
AL9
E
271 280Right-handed alpha
Helix 109
AM1
E
282 286Right-handed 310
Helix 110
AM2
E
288 303Right-handed alpha
Helix 111
AM3
E
305 307Right-handed 310
Helix 112
AM4
E
308 319Right-handed alpha
Helix 113
AM5
E
321 336Right-handed alpha
Helix 114
AM6
E
340 349Right-handed alpha
Helix 115
AM7
E
354 368Right-handed alpha
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There are 10 sheets in PDB entry 5D6S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 23first strand
Strand 2
A
66 73anti-parallel
Strand 3
A
163 170anti-parallel
Strand 4
A
125 128anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
154 155anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 23first strand
Strand 2
B
66 73anti-parallel
Strand 3
B
163 170anti-parallel
Strand 4
B
125 128anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
154 155anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 23first strand
Strand 2
C
66 73anti-parallel
Strand 3
C
163 170anti-parallel
Strand 4
C
125 128anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 148first strand
Strand 2
C
154 155anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 23first strand
Strand 2
D
66 73anti-parallel
Strand 3
D
163 170anti-parallel
Strand 4
D
125 128anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
147 148first strand
Strand 2
D
154 155anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
18 23first strand
Strand 2
E
66 73anti-parallel
Strand 3
E
163 170anti-parallel
Strand 4
E
125 128anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
147 148first strand
Strand 2
E
154 155anti-parallel
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