Analysis of interatomic Contacts of Structural Units in PDB entry:
5D6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D6T entry

There is 1 chain in PDB entry 5D6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 52SER 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5D6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 83Right-handed alpha
Helix 2
AA2
A
105 117Right-handed alpha
Helix 3
AA3
A
135 154Right-handed alpha
Helix 4
AA4
A
173 190Right-handed alpha
Helix 5
AA5
A
208 215Right-handed 310
Helix 6
AA6
A
225 231Right-handed alpha
Helix 7
AA7
A
232 240Right-handed 310
Helix 8
AA8
A
244 246Right-handed 310
Helix 9
AA9
A
261 275Right-handed alpha
Helix 10
AB1
A
294 304Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5D6T.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
88 92parallel
Strand 3
A
121 128parallel
Strand 4
A
162 166parallel
Strand 5
A
198 202parallel
Strand 6
A
217 224parallel
Strand 7
A
248 253parallel
Strand 8
A
277 280parallel
Strand 9
A
59 63parallel
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