Analysis of interatomic Contacts of Structural Units in PDB entry:
5D6Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5D6Y entry

There are 14 chains in PDB entry 5D6Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 898	THR 1005
a	GLN 19	THR 22
a	ALA 24	LYS 27
B	SER 898	THR 1005
b	GLN 19	THR 22
b	ALA 24	LYS 27
C	SER 898	VAL 1003
c	LEU 20	THR 22
c	ALA 24	ARG 26
D	SER 898	VAL 1003
d	LEU 20	THR 22
d	ALA 24	ARG 26
E	SER 898	THR 1005
F	SER 898	THR 1005

There are 14 helices in PDB entry 5D6Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	942	946	Right-handed 310
Helix 2	AA2	A	950	955	Right-handed alpha
Helix 3	AA3	B	942	946	Right-handed 310
Helix 4	AA4	B	950	955	Right-handed alpha
Helix 5	AA5	C	942	946	Right-handed 310
Helix 6	AA6	C	950	955	Right-handed alpha
Helix 7	AA7	C	1001	1003	Right-handed 310
Helix 8	AA8	D	942	946	Right-handed 310
Helix 9	AA9	D	950	955	Right-handed alpha
Helix 10	AB1	D	1001	1003	Right-handed 310
Helix 11	AB2	E	942	946	Right-handed 310
Helix 12	AB3	E	950	955	Right-handed alpha
Helix 13	AB4	F	942	946	Right-handed 310
Helix 14	AB5	F	950	955	Right-handed alpha

There are 12 sheets in PDB entry 5D6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	962	966	first strand
Strand 2	A	972	990	anti-parallel
Strand 3	A	914	932	anti-parallel
Strand 4	A	904	908	anti-parallel
Strand 5	A	1003	1004	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	995	999	first strand
Strand 2	A	972	990	anti-parallel
Strand 3	A	914	932	anti-parallel
Strand 4	A	936	941	anti-parallel
Strand 5	a	24	25	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	962	966	first strand
Strand 2	B	972	990	anti-parallel
Strand 3	B	914	932	anti-parallel
Strand 4	B	904	908	anti-parallel
Strand 5	B	1003	1004	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	995	999	first strand
Strand 2	B	972	990	anti-parallel
Strand 3	B	914	932	anti-parallel
Strand 4	B	936	941	anti-parallel
Strand 5	b	24	25	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	904	908	first strand
Strand 2	C	914	932	anti-parallel
Strand 3	C	972	989	anti-parallel
Strand 4	C	995	999	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	962	966	first strand
Strand 2	C	972	989	anti-parallel
Strand 3	C	914	932	anti-parallel
Strand 4	C	936	941	anti-parallel
Strand 5	c	24	25	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	904	908	first strand
Strand 2	D	914	932	anti-parallel
Strand 3	D	972	989	anti-parallel
Strand 4	D	995	999	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	962	966	first strand
Strand 2	D	972	989	anti-parallel
Strand 3	D	914	932	anti-parallel
Strand 4	D	936	941	anti-parallel
Strand 5	d	24	25	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	937	941	first strand
Strand 2	E	914	932	anti-parallel
Strand 3	E	973	990	anti-parallel
Strand 4	E	995	999	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	962	965	first strand
Strand 2	E	973	990	anti-parallel
Strand 3	E	914	932	anti-parallel
Strand 4	E	903	908	anti-parallel
Strand 5	E	1003	1004	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	937	941	first strand
Strand 2	F	914	932	anti-parallel
Strand 3	F	972	990	anti-parallel
Strand 4	F	994	999	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	962	966	first strand
Strand 2	F	972	990	anti-parallel
Strand 3	F	914	932	anti-parallel
Strand 4	F	904	908	anti-parallel
Strand 5	F	1003	1004	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5D6Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
5D6Y