Analysis of interatomic Contacts of Structural Units in PDB entry:
5D76


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D76 entry

There are 2 chains in PDB entry 5D76 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3LYS 245
B
 THR 2PHE 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5D76. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 13Right-handed alpha
Helix 2
AA2
A
25 38Right-handed alpha
Helix 3
AA3
A
61 63Right-handed 310
Helix 4
AA4
A
64 69Right-handed alpha
Helix 5
AA5
A
70 75Right-handed 310
Helix 6
AA6
A
134 138Right-handed alpha
Helix 7
AA7
B
3 13Right-handed alpha
Helix 8
AA8
B
25 38Right-handed alpha
Helix 9
AA9
B
61 65Right-handed 310
Helix 10
AB1
B
70 75Right-handed 310
Helix 11
AB2
B
134 138Right-handed alpha
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There are 6 sheets in PDB entry 5D76. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
141 146anti-parallel
Strand 3
A
89 92anti-parallel
Strand 4
A
102 110anti-parallel
Strand 5
A
113 118anti-parallel
Strand 6
A
128 133anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 194first strand
Strand 2
A
176 180anti-parallel
Strand 3
A
223 232anti-parallel
Strand 4
A
235 236anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 194first strand
Strand 2
A
176 180anti-parallel
Strand 3
A
223 232anti-parallel
Strand 4
A
210 217anti-parallel
Strand 5
A
198 207anti-parallel
Strand 6
A
161 172anti-parallel
Strand 7
A
242 244anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
141 146anti-parallel
Strand 3
B
89 92anti-parallel
Strand 4
B
102 110anti-parallel
Strand 5
B
113 118anti-parallel
Strand 6
B
128 133anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 236first strand
Strand 2
B
222 232anti-parallel
Strand 3
B
210 218anti-parallel
Strand 4
B
198 207anti-parallel
Strand 5
B
161 172anti-parallel
Strand 6
B
242 243anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 180first strand
Strand 2
B
189 194anti-parallel
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