Analysis of interatomic Contacts of Structural Units in PDB entry:
5D79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D79 entry

There are 2 chains in PDB entry 5D79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 28ASN 530
B
 HIS 28ASN 530
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 5D79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 37Right-handed alpha
Helix 2
AA2
A
45 47Right-handed 310
Helix 3
AA3
A
57 64Right-handed alpha
Helix 4
AA4
A
67 72Right-handed 310
Helix 5
AA5
A
86 101Right-handed alpha
Helix 6
AA6
A
152 164Right-handed alpha
Helix 7
AA7
A
178 185Right-handed alpha
Helix 8
AA8
A
191 196Right-handed alpha
Helix 9
AA9
A
198 200Right-handed 310
Helix 10
AB1
A
216 221Right-handed alpha
Helix 11
AB2
A
221 228Right-handed alpha
Helix 12
AB3
A
232 236Right-handed 310
Helix 13
AB4
A
262 277Right-handed alpha
Helix 14
AB5
A
309 321Right-handed alpha
Helix 15
AB6
A
322 325Right-handed 310
Helix 16
AB7
A
327 329Right-handed 310
Helix 17
AB8
A
335 344Right-handed alpha
Helix 18
AB9
A
351 357Right-handed 310
Helix 19
AC1
A
377 389Right-handed alpha
Helix 20
AC2
A
390 394Right-handed 310
Helix 21
AC3
A
405 410Right-handed alpha
Helix 22
AC4
A
411 415Right-handed 310
Helix 23
AC5
A
436 439Right-handed 310
Helix 24
AC6
A
440 459Right-handed alpha
Helix 25
AC7
A
460 462Right-handed 310
Helix 26
AC8
A
475 479Right-handed 310
Helix 27
AC9
A
487 501Right-handed alpha
Helix 28
AD1
A
503 515Right-handed alpha
Helix 29
AD2
B
29 34Right-handed alpha
Helix 30
AD3
B
55 63Right-handed alpha
Helix 31
AD4
B
67 71Right-handed 310
Helix 32
AD5
B
86 99Right-handed alpha
Helix 33
AD6
B
152 164Right-handed alpha
Helix 34
AD7
B
178 185Right-handed alpha
Helix 35
AD8
B
191 196Right-handed alpha
Helix 36
AD9
B
197 200Right-handed 310
Helix 37
AE1
B
216 221Right-handed alpha
Helix 38
AE2
B
221 228Right-handed alpha
Helix 39
AE3
B
232 236Right-handed 310
Helix 40
AE4
B
262 277Right-handed alpha
Helix 41
AE5
B
309 321Right-handed alpha
Helix 42
AE6
B
322 325Right-handed 310
Helix 43
AE7
B
327 329Right-handed 310
Helix 44
AE8
B
335 344Right-handed alpha
Helix 45
AE9
B
351 357Right-handed 310
Helix 46
AF1
B
377 388Right-handed alpha
Helix 47
AF2
B
389 394Right-handed 310
Helix 48
AF3
B
405 410Right-handed alpha
Helix 49
AF4
B
436 440Right-handed 310
Helix 50
AF5
B
444 458Right-handed alpha
Helix 51
AF6
B
459 462Right-handed 310
Helix 52
AF7
B
475 479Right-handed 310
Helix 53
AF8
B
487 501Right-handed alpha
Helix 54
AF9
B
503 515Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5D79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
80 82anti-parallel
Strand 3
A
125 129parallel
Strand 4
A
103 107parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 139first strand
Strand 2
A
144 148anti-parallel
Strand 3
A
238 245anti-parallel
Strand 4
A
202 208anti-parallel
Strand 5
A
214 215anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
247 248anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 334first strand
Strand 2
A
253 260anti-parallel
Strand 3
A
298 306anti-parallel
Strand 4
A
284 292anti-parallel
Strand 5
A
396 402anti-parallel
Strand 6
A
425 434anti-parallel
Strand 7
A
363 372anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
80 82anti-parallel
Strand 3
B
125 129parallel
Strand 4
B
103 107parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 139first strand
Strand 2
B
144 148anti-parallel
Strand 3
B
238 245anti-parallel
Strand 4
B
202 208anti-parallel
Strand 5
B
214 215anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 168first strand
Strand 2
B
247 248anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 334first strand
Strand 2
B
253 260anti-parallel
Strand 3
B
298 306anti-parallel
Strand 4
B
284 292anti-parallel
Strand 5
B
396 402anti-parallel
Strand 6
B
425 434anti-parallel
Strand 7
B
363 372anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il