Analysis of interatomic Contacts of Structural Units in PDB entry:
5D7B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D7B entry

There are 2 chains in PDB entry 5D7B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 349
B
 MET 1SER 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5D7B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed alpha
Helix 2
AA2
A
62 69Right-handed alpha
Helix 3
AA3
A
106 110Right-handed 310
Helix 4
AA4
A
114 131Right-handed alpha
Helix 5
AA5
A
142 155Right-handed alpha
Helix 6
AA6
A
156 159Right-handed 310
Helix 7
AA7
A
172 188Right-handed alpha
Helix 8
AA8
A
189 196Right-handed 310
Helix 9
AA9
A
199 202Right-handed 310
Helix 10
AB1
A
203 218Right-handed alpha
Helix 11
AB2
A
220 226Right-handed alpha
Helix 12
AB3
A
227 233Right-handed 310
Helix 13
AB4
A
236 243Right-handed alpha
Helix 14
AB5
A
244 250Right-handed alpha
Helix 15
AB6
A
253 266Right-handed alpha
Helix 16
AB7
A
267 274Right-handed 310
Helix 17
AB8
A
276 283Right-handed alpha
Helix 18
AB9
A
300 309Right-handed alpha
Helix 19
AC1
A
323 330Right-handed 310
Helix 20
AC2
A
334 349Right-handed alpha
Helix 21
AC3
B
8 13Right-handed alpha
Helix 22
AC4
B
62 69Right-handed alpha
Helix 23
AC5
B
106 110Right-handed 310
Helix 24
AC6
B
114 131Right-handed alpha
Helix 25
AC7
B
142 155Right-handed alpha
Helix 26
AC8
B
156 159Right-handed 310
Helix 27
AC9
B
172 188Right-handed alpha
Helix 28
AD1
B
189 196Right-handed 310
Helix 29
AD2
B
199 202Right-handed 310
Helix 30
AD3
B
203 218Right-handed alpha
Helix 31
AD4
B
220 226Right-handed alpha
Helix 32
AD5
B
227 233Right-handed 310
Helix 33
AD6
B
236 243Right-handed alpha
Helix 34
AD7
B
244 250Right-handed alpha
Helix 35
AD8
B
253 266Right-handed alpha
Helix 36
AD9
B
267 274Right-handed 310
Helix 37
AE1
B
276 283Right-handed alpha
Helix 38
AE2
B
300 309Right-handed alpha
Helix 39
AE3
B
323 330Right-handed 310
Helix 40
AE4
B
334 349Right-handed alpha
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There are 2 sheets in PDB entry 5D7B. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 24first strand
Strand 2
A
30 41anti-parallel
Strand 3
A
82 86anti-parallel
Strand 4
A
51 53parallel
Strand 5
A
137 141parallel
Strand 6
A
161 165parallel
Strand 7
A
287 290parallel
Strand 8
A
315 316parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 24first strand
Strand 2
B
30 41anti-parallel
Strand 3
B
82 86anti-parallel
Strand 4
B
51 53parallel
Strand 5
B
137 141parallel
Strand 6
B
161 165parallel
Strand 7
B
287 290parallel
Strand 8
B
315 316parallel
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