Analysis of interatomic Contacts of Structural Units in PDB entry:
5D7K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D7K entry

There are 2 chains in PDB entry 5D7K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLU 1SER 199
E
 VAL 2ALA 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5D7K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
80 84Right-handed 310
Helix 2
AA2
D
162 165Right-handed 310
Helix 3
AA3
D
181 186Right-handed alpha
Helix 4
AA4
E
82 86Right-handed 310
Helix 5
AA5
E
130 138Right-handed alpha
Helix 6
AA6
E
197 201Right-handed alpha
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There are 9 sheets in PDB entry 5D7K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
19 26anti-parallel
Strand 3
D
71 76anti-parallel
Strand 4
D
61 66anti-parallel
Strand 5
D
56 58anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
103 108parallel
Strand 3
D
85 92anti-parallel
Strand 4
D
32 38anti-parallel
Strand 5
D
44 49anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
103 108parallel
Strand 3
D
85 92anti-parallel
Strand 4
D
97 99anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
152 153first strand
Strand 2
D
166 174anti-parallel
Strand 3
D
130 135anti-parallel
Strand 4
D
117 123anti-parallel
Strand 5
E
123 128anti-parallel
Strand 6
E
139 149anti-parallel
Strand 7
E
187 196anti-parallel
Strand 8
E
169 171anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
157 161first strand
Strand 2
D
166 174anti-parallel
Strand 3
D
130 135anti-parallel
Strand 4
D
117 123anti-parallel
Strand 5
E
123 128anti-parallel
Strand 6
E
139 149anti-parallel
Strand 7
E
187 196anti-parallel
Strand 8
E
176 177anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 6first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
73 78anti-parallel
Strand 4
E
64 70anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
108 113parallel
Strand 3
E
87 94anti-parallel
Strand 4
E
31 38anti-parallel
Strand 5
E
42 49anti-parallel
Strand 6
E
56 57anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
108 113parallel
Strand 3
E
87 94anti-parallel
Strand 4
E
103 104anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
163 165first strand
Strand 2
E
154 160anti-parallel
Strand 3
E
206 213anti-parallel
Strand 4
E
232 239anti-parallel
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