Analysis of interatomic Contacts of Structural Units in PDB entry:
5D7L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5D7L entry

There are 7 chains in PDB entry 5D7L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1	VAL 269
B	MET 0	ARG 97
C	ARG 1	VAL 269
D	GLU 1	SER 199
E	VAL 2	ALA 242
F	MET 0	ASP 98
G	ASP 2	PHE 99

There are 17 helices in PDB entry 5D7L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	85	Right-handed alpha
Helix 2	AA2	A	133	146	Right-handed alpha
Helix 3	AA3	A	146	159	Right-handed alpha
Helix 4	AA4	A	159	172	Right-handed alpha
Helix 5	AA5	A	172	177	Right-handed alpha
Helix 6	AA6	C	48	54	Right-handed alpha
Helix 7	AA7	C	55	85	Right-handed alpha
Helix 8	AA8	C	133	146	Right-handed alpha
Helix 9	AA9	C	146	159	Right-handed alpha
Helix 10	AB1	C	159	172	Right-handed alpha
Helix 11	AB2	C	172	177	Right-handed alpha
Helix 12	AB3	D	80	84	Right-handed 310
Helix 13	AB4	D	181	185	Right-handed 310
Helix 14	AB5	E	132	137	Right-handed alpha
Helix 15	AB6	E	197	202	Right-handed alpha
Helix 16	AB7	G	80	84	Right-handed 310
Helix 17	AB8	H	197	202	Right-handed alpha

There are 35 sheets in PDB entry 5D7L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	32	37	anti-parallel
Strand 3	A	22	28	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	91	100	anti-parallel
Strand 6	A	106	114	anti-parallel
Strand 7	A	117	123	anti-parallel
Strand 8	A	128	131	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	189	first strand
Strand 2	A	197	205	anti-parallel
Strand 3	A	238	245	anti-parallel
Strand 4	A	226	227	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	189	first strand
Strand 2	A	197	205	anti-parallel
Strand 3	A	238	245	anti-parallel
Strand 4	A	231	232	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	211	216	anti-parallel
Strand 3	A	255	260	anti-parallel
Strand 4	A	263	268	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	56	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	32	37	anti-parallel
Strand 3	C	22	27	anti-parallel
Strand 4	C	3	12	anti-parallel
Strand 5	C	91	100	anti-parallel
Strand 6	C	106	114	anti-parallel
Strand 7	C	117	123	anti-parallel
Strand 8	C	128	131	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	200	205	anti-parallel
Strand 3	C	238	243	anti-parallel
Strand 4	C	226	227	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	200	205	anti-parallel
Strand 3	C	238	243	anti-parallel
Strand 4	C	231	232	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	216	first strand
Strand 2	C	254	260	anti-parallel
Strand 3	C	263	268	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	19	26	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	61	66	anti-parallel
Strand 5	D	55	58	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	103	108	parallel
Strand 3	D	86	92	anti-parallel
Strand 4	D	32	38	anti-parallel
Strand 5	D	43	49	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	103	108	parallel
Strand 3	D	86	92	anti-parallel
Strand 4	D	97	99	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	137	first strand
Strand 2	D	166	175	anti-parallel
Strand 3	D	151	153	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	137	first strand
Strand 2	D	166	175	anti-parallel
Strand 3	D	157	161	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	73	78	anti-parallel
Strand 4	E	64	67	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	108	113	parallel
Strand 3	E	88	94	anti-parallel
Strand 4	E	31	38	anti-parallel
Strand 5	E	42	49	anti-parallel
Strand 6	E	56	57	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	108	113	parallel
Strand 3	E	88	94	anti-parallel
Strand 4	E	103	104	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	127	first strand
Strand 2	E	139	149	anti-parallel
Strand 3	E	187	196	anti-parallel
Strand 4	E	169	171	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	127	first strand
Strand 2	E	139	149	anti-parallel
Strand 3	E	187	196	anti-parallel
Strand 4	E	176	177	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	165	first strand
Strand 2	E	154	160	anti-parallel
Strand 3	E	206	213	anti-parallel
Strand 4	E	233	239	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	21	30	anti-parallel
Strand 3	F	62	70	anti-parallel
Strand 4	F	50	51	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	21	30	anti-parallel
Strand 3	F	62	70	anti-parallel
Strand 4	F	55	56	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	45	first strand
Strand 2	F	36	41	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	91	94	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	19	26	anti-parallel
Strand 3	G	71	76	anti-parallel
Strand 4	G	61	66	anti-parallel
Strand 5	G	56	58	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	103	108	parallel
Strand 3	G	85	92	anti-parallel
Strand 4	G	32	38	anti-parallel
Strand 5	G	43	49	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	103	108	parallel
Strand 3	G	85	92	anti-parallel
Strand 4	G	97	99	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	117	121	first strand
Strand 2	G	131	135	anti-parallel
Strand 3	G	166	174	anti-parallel
Strand 4	G	152	153	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	117	121	first strand
Strand 2	G	131	135	anti-parallel
Strand 3	G	166	174	anti-parallel
Strand 4	G	157	161	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	19	24	anti-parallel
Strand 3	H	73	78	anti-parallel
Strand 4	H	65	67	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	108	113	parallel
Strand 3	H	88	89	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	57	first strand
Strand 2	H	47	49	anti-parallel
Strand 3	H	31	34	anti-parallel
Strand 4	H	91	94	anti-parallel
Strand 5	H	103	104	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	126	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	187	196	anti-parallel
Strand 4	H	169	171	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	126	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	187	196	anti-parallel
Strand 4	H	176	177	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	163	165	first strand
Strand 2	H	154	160	anti-parallel
Strand 3	H	207	213	anti-parallel
Strand 4	H	233	238	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5D7L

Analysis of interatomic Contacts of Structural Units in PDB entry:
5D7L